Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0882 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0883 Acco11g1312 . . . Adu05g00161 . . . Aev05g0186 . Ahy15g0149 . Aip05g00148 . Alju09g1324 . . . Apr7g1802 . Arst5g00200 . Bach4g00952 . Bisa11g2058 . Bva08g01106 Bva11g01325 . . . . Dere09g1335 . Dod02g0196 . Enph13g1623 . Glsi05g1074 . Gma01g00101 Gma09g01951 . . Gso1g0097 Gso1g0097 . . Lal15g0372 Lal16g0430 . . . . Lan18g0797 Lan18g0797 . . . . Lapu2g00890 . . . Lele49g0880 Lele50g0921 Lele51g0897 Lele52g0902 . . . . Lja2g0782 . Mal6g0630 . Mepo5g01300 . Mesa17g01412 . Mibi12g1108 . Mtr5g1168 . Phac2g02127 . Phco4g00591 . Prci10g1421 . Psa2g3175 . Pste1g00452 . Pte14g00727 Pte12g00633 . . . . Pvu2g1378 . . . . . Spst2g01181 . . . Sto6g4142 . Tpr2g1414 . Trre9g01727 . Tsu05g01168 . . . . . Vimu7g03417 . . . . . . .
Vvi2g0884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0885 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0887 Acco11g1313 . . . Adu05g00162 . Aed6g0120 . Aev05g0187 . Ahy15g0150 . Aip05g00149 . Alju09g1326 . . . Apr7g1803 . Arst5g00202 . Bach4g00951 . Bisa11g2056 . Bva08g01105 . . . Cca06g01027 . Dere09g1333 . Dod02g0197 . Enph13g1622 . Glsi05g1075 . Gma01g00100 Gma09g01952 . . Gso1g0096 Gso1g0096 . . . . . . . . . . . . . . Lapu2g00891 . . . Lele49g0879 Lele50g0920 Lele51g0896 Lele52g0901 . . . . Lja2g0781 . Mal6g0626 . Mepo5g01298 . Mesa17g01411 . Mibi12g1110 . Mtr5g1167 . Phac2g02126 . Phco4g00592 . Prci10g1420 . Psa2g3178 . Pste1g00438 . . . . . Pumo8g00170 . Pvu2g1377 . Rops1g01289 . Seca10g01253 . Spst2g01180 . Ssu2g2006 . Sto6g4141 . Tpr2g1413 . Trre9g01720 . Tsu05g01165 . Vian10g01039 . Vifa1g05961 . Vimu7g03416 . Viun2g01506 . Vivi2g02482 . Vra11g1012 .
Vvi2g0888 . . . . . . . . Aev05g0190 . Ahy15g0153 . Aip05g00152 . . . . . . . . . . . . . . . . . Cca06g01039 . . . Dod02g0202 . . . . . . Gma09g01955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g0780 . Mal6g0618 . . . . . . . Mtr5g1162 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g2009 . . . Tpr2g1404 . . . Tsu05g01157 . . . . . . . . . . . Vra11g1009 .
Vvi2g0889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0882 Chr2 10368447 10368674 +
Vvi Vvi2g0883 Chr2 10370898 10373823 -
Acco Acco11g1312 Chr11 27303048 27304612 -
Adu Adu05g00161 Chr05 1845868 1848584 -
Aev Aev05g0186 Chr05 1439964 1442039 -
Ahy Ahy15g0149 Chr15 1836132 1839211 -
Aip Aip05g00148 Chr05 1691237 1693745 -
Alju Alju09g1324 Chr09 36989883 36991808 -
Apr Apr7g1802 Chr7 25423548 25426719 -
Arst Arst5g00200 Chr5 1865787 1868257 -
Bach Bach4g00952 Chr4 6401227 6404359 +
Bisa Bisa11g2058 Chr11 43613171 43615634 +
Bva Bva08g01106 Chr08 5649717 5652242 +
Bva Bva11g01325 Chr11 13522256 13526331 -
Dere Dere09g1335 Chr09 17435348 17437928 +
Dod Dod02g0196 Chr02 2738862 2742019 -
Enph Enph13g1623 Chr13 21922022 21925060 +
Glsi Glsi05g1074 Chr05 60550931 60556168 -
Gma Gma01g00101 Chr01 1080359 1083619 +
Gma Gma09g01951 Chr09 45160079 45163958 -
Gso Gso1g0097 Chr1 1073885 1077721 +
Gso Gso1g0097 Chr1 1073885 1077721 +
Lal Lal15g0372 Chr15 2513243 2515712 +
Lal Lal16g0430 Chr16 2604127 2606125 +
Lan Lan18g0797 Chr18 13412084 13414507 -
Lan Lan18g0797 Chr18 13412084 13414507 -
Lapu Lapu2g00890 Chr2 8238632 8242202 -
Lele Lele49g0880 Chr49 5443912 5446320 +
Lele Lele50g0921 Chr50 5805762 5807385 +
Lele Lele51g0897 Chr51 5521788 5523418 +
Lele Lele52g0902 Chr52 5846023 5847683 +
Lja Lja2g0782 Chr2 7133405 7136146 +
Mal Mal6g0630 Chr6 8654846 8657607 +
Mepo Mepo5g01300 Chr5 13242792 13246013 +
Mesa Mesa17g01412 Chr17 18915932 18918745 +
Mibi Mibi12g1108 Chr12 26319102 26320718 -
Mtr Mtr5g1168 Chr5 11714038 11716870 +
Phac Phac2g02127 Chr2 23059858 23063493 +
Phco Phco4g00591 Chr4 4469825 4472496 -
Prci Prci10g1421 Chr10 9526337 9529228 +
Psa Psa2g3175 Chr2 364069851 364071740 -
Pste Pste1g00452 Chr1 1487483 1491380 +
Pte Pte14g00727 Chr14 28354054 28355536 -
Pte Pte12g00633 Chr12 5914573 5917315 -
Pvu Pvu2g1378 Chr2 26468784 26472092 +
Spst Spst2g01181 Chr2 10415838 10418515 +
Sto Sto6g4142 Chr6 44806564 44808909 +
Tpr Tpr2g1414 Chr2 16522255 16524976 +
Trre Trre9g01727 Chr9 15464011 15466400 +
Tsu Tsu05g01168 Chr05 10317151 10319541 +
Vimu Vimu7g03417 Chr7 28820872 28824104 +
Vvi Vvi2g0884 Chr2 10416655 10417220 +
Vvi Vvi2g0885 Chr2 10426524 10430565 +
Vvi Vvi2g0886 Chr2 10444047 10444299 +
Vvi Vvi2g0887 Chr2 10491214 10506570 +
Acco Acco11g1313 Chr11 27310831 27318287 +
Adu Adu05g00162 Chr05 1874005 1879777 +
Aed Aed6g0120 Chr6 1081446 1087670 -
Aev Aev05g0187 Chr05 1442206 1450804 +
Ahy Ahy15g0150 Chr15 1857098 1862676 +
Aip Aip05g00149 Chr05 1710107 1715917 +
Alju Alju09g1326 Chr09 37009541 37016824 +
Apr Apr7g1803 Chr7 25432192 25445946 +
Arst Arst5g00202 Chr5 1893598 1899517 +
Bach Bach4g00951 Chr4 6393170 6400087 -
Bisa Bisa11g2056 Chr11 43590697 43597878 -
Bva Bva08g01105 Chr08 5643015 5648930 -
Cca Cca06g01027 Chr06 24269103 24282379 +
Dere Dere09g1333 Chr09 17412085 17419219 -
Dod Dod02g0197 Chr02 2750634 2761406 +
Enph Enph13g1622 Chr13 21903544 21910675 -
Glsi Glsi05g1075 Chr05 60563015 60572417 +
Gma Gma01g00100 Chr01 1068718 1075719 -
Gma Gma09g01952 Chr09 45167054 45174240 +
Gso Gso1g0096 Chr1 1062723 1070159 -
Gso Gso1g0096 Chr1 1062723 1070159 -
Lapu Lapu2g00891 Chr2 8243939 8252711 +
Lele Lele49g0879 Chr49 5433840 5439871 -
Lele Lele50g0920 Chr50 5797918 5804021 -
Lele Lele51g0896 Chr51 5505409 5513612 -
Lele Lele52g0901 Chr52 5837380 5843670 -
Lja Lja2g0781 Chr2 7123818 7131068 -
Mal Mal6g0626 Chr6 8606016 8614099 -
Mepo Mepo5g01298 Chr5 13213639 13221691 -
Mesa Mesa17g01411 Chr17 18899777 18907737 -
Mibi Mibi12g1110 Chr12 26334326 26337999 +
Mtr Mtr5g1167 Chr5 11702406 11710837 -
Phac Phac2g02126 Chr2 23049318 23057351 -
Phco Phco4g00592 Chr4 4475917 4482729 +
Prci Prci10g1420 Chr10 9508452 9515617 -
Psa Psa2g3178 Chr2 364170302 364177895 +
Pste Pste1g00438 Chr1 1461187 1464394 -
Pumo Pumo8g00170 Chr8 5775122 5780488 +
Pvu Pvu2g1377 Chr2 26453222 26460546 -
Rops Rops1g01289 Chr1 29293997 29303139 +
Seca Seca10g01253 Chr10 12422994 12431465 -
Spst Spst2g01180 Chr2 10405100 10413368 -
Ssu Ssu2g2006 Chr2 73353761 73355057 +
Sto Sto6g4141 Chr6 44797208 44799622 -
Tpr Tpr2g1413 Chr2 16508441 16516434 -
Trre Trre9g01720 Chr9 15385864 15393197 -
Tsu Tsu05g01165 Chr05 10301461 10308873 -
Vian Vian10g01039 Chr10 11532422 11540844 -
Vifa Vifa1g05961 Chr1 932931630 932943366 +
Vimu Vimu7g03416 Chr7 28807473 28815506 -
Viun Viun2g01506 Chr2 25304996 25312446 +
Vivi Vivi2g02482 Chr2 113921816 113923250 +
Vra Vra11g1012 Chr11 9041134 9049575 -
Vvi Vvi2g0888 Chr2 10508820 10511615 -
Aev Aev05g0190 Chr05 1466390 1469230 -
Ahy Ahy15g0153 Chr15 1878566 1882346 -
Aip Aip05g00152 Chr05 1744727 1747558 -
Cca Cca06g01039 Chr06 24339959 24343221 -
Dod Dod02g0202 Chr02 2773332 2774249 -
Gma Gma09g01955 Chr09 45185730 45188630 -
Lja Lja2g0780 Chr2 7119760 7123792 +
Mal Mal6g0618 Chr6 8524340 8532491 -
Mtr Mtr5g1162 Chr5 11650192 11654047 -
Ssu Ssu2g2009 Chr2 73383153 73385972 -
Tpr Tpr2g1404 Chr2 16406646 16410507 -
Tsu Tsu05g01157 Chr05 10192694 10228214 -
Vra Vra11g1009 Chr11 9018545 9021748 +
Vvi Vvi2g0889 Chr2 10556395 10556745 +
Vvi Vvi2g0890 Chr2 10573744 10587498 +
Vvi Vvi2g0891 Chr2 10591357 10591814 +