Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0780 ATGAAAGCCCGTTACAGGATTGCACATGAGTTCAAAGGCATCAACTCTCGCATCAGAACTATTTTTAATACTCATAAGAGGTTCCTCAGAAAACTTGACACTGCTTCAGAGGCTTCAAGTTCCAATTCTTCAGGTAACACATGGAATGATCAAAGAGGAGATGCCCTTCTGCTGGACAACACTGATCTAGTGGGCATAGACAGGCGTAAAAAGAAGTTGATGGGGTGTTTGATAAAACCTTGTCCTGTACGCAAGGTAATTTCTGTTACTGGGATGGGAGGGATGGGGAAAACTACTTTGGTGAAGCAAGTATATGATGATCCTGTAGTGATAAAACACTTCAGAGCCTGTGCTTGGATCACTGTTTCTCAATCTTGTGAAATTGGGGAGCTTCTCAGGGACTTGGCCCGGCAACTCTTTTCCGAGATAAGAAGACCAGTCCCACTAGGCCTGGAAAACATGCGCTGTGATAGGCTGAAGATGATTATCAAAGACCTTCTGCAGAGGAGGAGGTACTTAGTGGTATTTGATGATGTCTGGCATGTTCGTGAATGGGAAGCTGTCAAATATGCATTACCAGACAACAACTGTGGCAGCAGGATCATGATCACAACTAGAAGATCAGACTTAGCCTTCACTTCCAGCACAGAATCCAAAGGAAAGGTGTATAACTTGCAACCCTTGAAAGAAGATGAGGCTTGGGAGCTTTTTTGCAGAAAAACTTTCCATGGTGACTCATGCCCCTCACATTTGATTGGTATTTGTACATACATCTTAAGAAAATGTGAGGGTCTTCCCCTTGCAATTGTGGCAATCAGTGGTGTCCTGGCTACAAAAGACAAGCGCCGGATCGATGAGTGGGACATGATTTGCCGCAGTCTTGGAGCTGAGATTCAAGGCAATGGCAAGCTTGATAATTTGAAAACAGTGCTTGGTCTCAGTTTCAATGACTTGCCTTACTATTTGAAGTATTGTTTCTTGTATTTGAGCATCTTCCCTGAGGATCATGTGATCCAGCGCATGAGGTTGATTCGCTTGTGGATAGCAGAAGGATTTATTAAAGCCATAGAAGGAAAAACAATGGAAGATGTTGCTGAGGATTACCTCAAGGAGCTCCTGAACAGAAATTTAGTGCAAGTAGCTGGGACAACCTCTGATGGAAGGGTCAAAACACTGAGAATCCATGATCTTCTGAGGGAGATCATCATTTCGAAATCTAAGGATCAAAACTTTGCGGCCATTGTCAAAGAACAAACAGCAGCATGGCCGGAAAAGATTCGGCGCCTTTCTGTGCAAGGCACGTCACCAAATGGACAGCAACAAAGGTCTGTCTCTAAACTCCGTTCTCTCTTCATGTTTGGAGTAGTTGAAAATTTATCCCTGGGAAAACTGTTTCCTAGGGGTTTCAAACTGCTTAGTGTGTTAGATTTTGAAGATGCACCATTGAACAAGTTTCCTGTAGCAGTTGTTGACCTTTATTATTTGAGATATCTAAGCTTAAGGAACACAAAGGTGCAGATGGTTCCAGGTCGTGTACTAGGGAAGTTGCAGAATCTAGAAACATTAGATCTGAAGAGGACTTGTGTCACAGAATTACCTGCTGATATAGTAAAGCTTAAAAAACTTCGCCATCTTCTTGTATATCAGTTTAAAGTCAAAGGGTATGCACAGTTCTACTCCAAATATGGTTTTACCTTTAAGAACCCCCATGAAATAGGAAATTTGCAGTCACTACAAAAGCTTTGTTTCGTGGAGGCTAACCAAGGTTATAGTGGTATGATGATAAAGCAGTTGGGGGAGCTAACTCAACTAAGAAGGTTAGGCATCATGAAACTCAGAGAGGAAGATGGAAAGGCTTTCTGTGTGTCCATTGAGAGGTTGACTAATCTTCGCGCCATCTCTGTTACTTCTGAGGGTGAAGATAAAGTCATTGATCTGAAGTTCCTTTCTTCACCCCCTCCATTTCTTCAACGCTTGTATCTGTTAGGACGGTTACAGGAGTTACCAAGTTGGATCCCTTCTCTTCATGGCCTGGCCAGGATCTTCCTAAAATGGAGCTGTTTGAAACATGATCCACTGGTGTATCTGCAGGACCTACCAAATCTTGCACATCTTGAACTGCTTCAAGTTTATGATGGTGACACATTGCATTTCAGGGGTGGGAAGTTCAAGAAGCTCAAGGTTTTAGGCCTTGACATGTTTGATGGGGTCAGTGAGGTGATAGTGGGGGAGGGTGCAATGCCCTGCCTGGAAACACTGAGCATTGGGCGTTGTGGCTTGTTGAAGAAGGTGCCATCAGGGATTGAACACTTGACTAAGGTGAAAGTCCTTGAGTTTTTTGATATGCCAGATGAACTGATGCAGACAATTTGCCCACATGGGAAGGGGAATGATTACTGGAAAGTTTCACATATACCAGAGGTTTATTCTACATACTGGCAAAATGGTGGCTGGGATGTTTACGCAGTGGGCAGTTTCAGAGACTGTTCTCCTCGATCAGGCACTGTCATGAGATGTCATGAACGCCGCAATCCATGGAAGGTGTAG 2547 0.4354 MKARYRIAHEFKGINSRIRTIFNTHKRFLRKLDTASEASSSNSSGNTWNDQRGDALLLDNTDLVGIDRRKKKLMGCLIKPCPVRKVISVTGMGGMGKTTLVKQVYDDPVVIKHFRACAWITVSQSCEIGELLRDLARQLFSEIRRPVPLGLENMRCDRLKMIIKDLLQRRRYLVVFDDVWHVREWEAVKYALPDNNCGSRIMITTRRSDLAFTSSTESKGKVYNLQPLKEDEAWELFCRKTFHGDSCPSHLIGICTYILRKCEGLPLAIVAISGVLATKDKRRIDEWDMICRSLGAEIQGNGKLDNLKTVLGLSFNDLPYYLKYCFLYLSIFPEDHVIQRMRLIRLWIAEGFIKAIEGKTMEDVAEDYLKELLNRNLVQVAGTTSDGRVKTLRIHDLLREIIISKSKDQNFAAIVKEQTAAWPEKIRRLSVQGTSPNGQQQRSVSKLRSLFMFGVVENLSLGKLFPRGFKLLSVLDFEDAPLNKFPVAVVDLYYLRYLSLRNTKVQMVPGRVLGKLQNLETLDLKRTCVTELPADIVKLKKLRHLLVYQFKVKGYAQFYSKYGFTFKNPHEIGNLQSLQKLCFVEANQGYSGMMIKQLGELTQLRRLGIMKLREEDGKAFCVSIERLTNLRAISVTSEGEDKVIDLKFLSSPPPFLQRLYLLGRLQELPSWIPSLHGLARIFLKWSCLKHDPLVYLQDLPNLAHLELLQVYDGDTLHFRGGKFKKLKVLGLDMFDGVSEVIVGEGAMPCLETLSIGRCGLLKKVPSGIEHLTKVKVLEFFDMPDELMQTICPHGKGNDYWKVSHIPEVYSTYWQNGGWDVYAVGSFRDCSPRSGTVMRCHERRNPWKV* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0780 848 PRINTS Disease resistance protein signature 166 180 - -
Lja2g0780 848 PRINTS Disease resistance protein signature 86 101 - -
Lja2g0780 848 PRINTS Disease resistance protein signature 514 530 - -
Lja2g0780 848 PRINTS Disease resistance protein signature 262 276 - -
Lja2g0780 848 Gene3D - 315 406 IPR036388 -
Lja2g0780 848 Pfam NB-ARC domain 69 316 IPR002182 GO:0043531
Lja2g0780 848 Gene3D - 227 314 IPR042197 -
Lja2g0780 848 PANTHER DISEASE RESISTANCE PROTEIN RP 50 811 IPR044974 GO:0006952
Lja2g0780 848 Pfam Leucine rich repeat 495 546 IPR001611 GO:0005515
Lja2g0780 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 329 IPR027417 -
Lja2g0780 848 SUPERFAMILY L domain-like 393 786 - -
Lja2g0780 848 Gene3D - 57 219 IPR027417 -
Lja2g0780 848 Gene3D Ribonuclease Inhibitor 439 795 IPR032675 -
Lja2g0780 848 PANTHER OS08G0539900 PROTEIN 50 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0780 Lja-Chr2 7119760 7123792 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0780 K13457 - gmx:100805346 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0780 2 7119760 7123792 Lja2g0780 2 7119760 7123792 ECH