Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0888 ATGGCGGAGTCTGTTGTAACCTTTCTACTCAACAAGCTTGCAACCTTACCACAGCTGGAACAGTTGAAACTGCTGAGAGGGGTTTGGGGAGACGTTGAATACATCAGAGATGAACTAGAGCGCATGAAGGCCTTCCTGAGGGTGGCAGATGCAATGGAAGAGAGCGACGAGGAACTCAAAGTATGGGTTAGGCAGGTCAGTGATGTTGCTTATGACACTGAAGATGTTCTCGATGAATTCTCACATCACCTTGCAGTACATCCCCAACAGGAATGGTTTTGCTGTTGGCTTGATATGATCAGCTTTTGCACTCCCAGCAACTGGACGAATCGCCTCCGAATTGCCTATAAAATGCAGGGCATCAAATCCAGAGTCATCAATATTTCTGAGGGGCATAGGAGATACCGTTACAGATCCGATGTTGCAAGGCAAGAATGCTCAAGCTCCATTACTACTGCTGCTACGAACATTCATGCAAGAAATATCGAGCGTAGAGGGGACGCACTTCTACTGGACGAAGCTGAGCTGGTGGGCATCAACCAGCACAAAAGCTTGCTGATCGAGTGCCTTGTAAAGGGCGGGTGCGGAGCTGGACTCAAGGTGGTTTCAGTTGTTGGGATGGGGGGACTAGGGAAGACTACCCTAGTGAAGAAAGTGTATGACGATATTGAAGTGAGGAAACACTTCGAAAGCCACATGTGGATCACAGTTTCTCAATCATTCAAGACTGAGGAGCTACTAAAGGACATGATTCGACAGCTCTACGACGGGATCAGGCAACCAGTGCCCAATTCTGTGGACATGGGGAGCAGCCAAATGCTGAAAGCATCCATCAAAGACTTCCTGCAACAAAGGAGGTACCTACTCATTCTAGACGACGTATGGGACTTACATGCTTGGGAAGCATTAAAATATACCTTGCCTAACTGCAATTGTGACGGCCGAGTATTGCTCACAACACGTAATGTTGATACAGCTTCGACGGCCTGTAAAGAGTCCCATGGTAATGTCTATACTTTGAAGCCCTTATCTCAAGAAGAGTCCTGGACTTTGTTTTGTAAAAAGACATTTCCGGCTGAGTCTTGCCCTTCCTATTTGGAGGGTATCTCTAAATGCATCCTACAAAGATGTGAGGGTTTGCCTCTTGCAATTGTGGCGGTCAGCGGCGTTTTGTCAACAAAGGACGGCATCGATGAATGGGAGAGTGTGTATCGCAGCCTTGGTGCTGAGCTAGAAGGCAACAACAAGTTCGATAGCTTGAAGGAAATATTGTTACTCAGTTACAATGATCTGCCTTATTATCTAAAATCATGTTTCTTGTACATGAGCATCTTTCCTGAGGATTATCTGATAAGGCGGATGAGACTTATTCGGTTATGGATGGCTGAAGGGTTTGTGGAAGCAAAAGGAAGAAAGACCCAAGAAGAAGTGGGAGAGGGCTACCTCAATGAGCTTGTCAATAGAAGCTTAGTCCAAGTCGCTACCAGAACTAGAAATGGAAGGGTTAGCACCTGCCGCGTCCATGACCTTTTGCGCGAGATTATAGTATCAAAGTCAAGAGGAGGCCAAAACCTGGTAGCAATAGCCAATGAAGAAAATGTAAGGTGGCCTGAAAAGATAAGACGCCTTGCTGTTCATAAGACCCTGGAAAATGTACCTCAGGACATGGAGCTGGGTCAGCTGCGTTCTCTGCTCATGTTCAGCTTACCATCCGGGGACTGCATTCCTACATTGTCTAGTGGTGGTCTTAGGCTGCTCAAGGTGTTGGATTTGCAAGGTGCACCCTTGGAGATTATTCCAAATGAAGTTTGGAATCTATTCAATTTGAGGTACCTGAGCTTGAGCAGAACCAAGGTGAAAGTGATCCCAAGCTCTATTGGGAAGCTTCAAAACCTTGAAACTCTGGATCTTAAACATTCCTATGTCACTGAGTTGCCAGCAGAGATCCTAATGCTCCATCAGCTCCGCCATCTCCTGCTTTATCGTTACGAGAAACAAACTTCTTCACCCTTCCACTCTACTTATGGTTTCAAGGCACCCCAGGGAATGCAAGCCTTATCCTTCCTACAAAAGCTTTGTTTTGTAGATGTAGAGGAGGGCAATGGTGTGATAAGTGAGGTGGGGCACCTGAAGCAACTGAGGAAGTTGGGCATTATCAAGTTGAGAAAGGAAGATGGGATGAATTTGTGCTCTTCCATTGAAAAATTAAGCAACCTCCGGTCGTTGGATGTGACTTCAATACAAGATGATGAGATGATTGACCTGCAATGCATGTCTTCGCCTCCTAGGTTCCTGCAACGCCTGTGGCTACAGGGGCGTCTAGAGAAGATGCCACACTGGATCTCTTCACTTGACAACCTTGTCAAACTACGCCTGAGGTGGAGTCGCTTGAGGGACGATCCTCTTGTGCTCCTTCAAGCTTTGCCCAGTCTCGTGGAACTTCAACTTCGCCATGCGTATGAAGGTGAATCCTTATGCTTCAAGAGTGCAGGGTTCTTGAGGCTTAATATTCTGCATTTCCATAAACTAGAGAGACTGAGACGGGTGACAGTGGAGGATGGGGCGATGCCTCGTCTTGAAAGATTAGGAATTTTCTACTGTAAACTGCTGGAGAAGGTGCCCCAGGGCATTCAGTTCCTCACGCAACTGAAGTCCCTCGATCTTGCTGAAATGCCGAATGAATTTATTGGGAAGCTACAGGACAGAAGTGGGGAAGATTATTCTGTAATTGAGCACATCCCAGATGTTCGTTACACCTATTGGGTCAACAACCAATGGAAGCAATATCGCCTCTAG 2796 0.4657 MAESVVTFLLNKLATLPQLEQLKLLRGVWGDVEYIRDELERMKAFLRVADAMEESDEELKVWVRQVSDVAYDTEDVLDEFSHHLAVHPQQEWFCCWLDMISFCTPSNWTNRLRIAYKMQGIKSRVINISEGHRRYRYRSDVARQECSSSITTAATNIHARNIERRGDALLLDEAELVGINQHKSLLIECLVKGGCGAGLKVVSVVGMGGLGKTTLVKKVYDDIEVRKHFESHMWITVSQSFKTEELLKDMIRQLYDGIRQPVPNSVDMGSSQMLKASIKDFLQQRRYLLILDDVWDLHAWEALKYTLPNCNCDGRVLLTTRNVDTASTACKESHGNVYTLKPLSQEESWTLFCKKTFPAESCPSYLEGISKCILQRCEGLPLAIVAVSGVLSTKDGIDEWESVYRSLGAELEGNNKFDSLKEILLLSYNDLPYYLKSCFLYMSIFPEDYLIRRMRLIRLWMAEGFVEAKGRKTQEEVGEGYLNELVNRSLVQVATRTRNGRVSTCRVHDLLREIIVSKSRGGQNLVAIANEENVRWPEKIRRLAVHKTLENVPQDMELGQLRSLLMFSLPSGDCIPTLSSGGLRLLKVLDLQGAPLEIIPNEVWNLFNLRYLSLSRTKVKVIPSSIGKLQNLETLDLKHSYVTELPAEILMLHQLRHLLLYRYEKQTSSPFHSTYGFKAPQGMQALSFLQKLCFVDVEEGNGVISEVGHLKQLRKLGIIKLRKEDGMNLCSSIEKLSNLRSLDVTSIQDDEMIDLQCMSSPPRFLQRLWLQGRLEKMPHWISSLDNLVKLRLRWSRLRDDPLVLLQALPSLVELQLRHAYEGESLCFKSAGFLRLNILHFHKLERLRRVTVEDGAMPRLERLGIFYCKLLEKVPQGIQFLTQLKSLDLAEMPNEFIGKLQDRSGEDYSVIEHIPDVRYTYWVNNQWKQYRL* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0888 931 Pfam Rx N-terminal domain 5 88 IPR041118 -
Vvi2g0888 931 PRINTS Disease resistance protein signature 281 295 - -
Vvi2g0888 931 PRINTS Disease resistance protein signature 201 216 - -
Vvi2g0888 931 PRINTS Disease resistance protein signature 377 391 - -
Vvi2g0888 931 PRINTS Disease resistance protein signature 627 643 - -
Vvi2g0888 931 Gene3D - 5 115 - -
Vvi2g0888 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 441 IPR027417 -
Vvi2g0888 931 FunFam Probable disease resistance protein At1g63360 428 517 - -
Vvi2g0888 931 Gene3D - 169 334 IPR027417 -
Vvi2g0888 931 Gene3D - 434 518 IPR036388 -
Vvi2g0888 931 Gene3D - 342 432 IPR042197 -
Vvi2g0888 931 SUPERFAMILY L domain-like 508 895 - -
Vvi2g0888 931 CDD RX-CC_like 2 130 IPR038005 -
Vvi2g0888 931 PANTHER DISEASE RESISTANCE PROTEIN RP 33 859 IPR044974 GO:0006952
Vvi2g0888 931 Pfam NB-ARC domain 181 430 IPR002182 GO:0043531
Vvi2g0888 931 Gene3D Ribonuclease Inhibitor 547 927 IPR032675 -
Vvi2g0888 931 FunFam Probable disease resistance protein At1g61300 162 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0888 Vvi-Chr2 10508820 10511615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0888 621 902 Receptor kinase-like Gene Family AT5G25910 22.476 1.67e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0888 K13457 - vvi:100854691 1850.87