Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2934 ATGGACAAACAGCTGCAAATGGCTGTGCATTCAAAGCAACTGCTACTTGTTGCGTTCCTTATTGTAGCAACTAAAAGTCAACCCATATCAAAGCCAGACTGTCAAACAGATTGTGGCAACGTCACCATTCCCTTCCCATTTGGCCTGACCGAGAATTGTTCCTTGAACTCCTCATTTCTTATCACTTGCAACCACACCCTTTCATCACACACCccgtttttgaaaaataatcatttctcCCCAGGTGTGCGTGTGCTAGACATCTCACTGGATGGCGAACTAAACATTTCATTGCCAGTAGCCAGAGATTGCATCTATTATAGTGAATTAGTGGCAACGGGTTATTCGTTCGACCTGAGGCCTTTTCACCTATCATCCACGCGAAACAAGTTAACTGTGGTGGGAGGTAACACGGTTGGAATAGTAGGGCCGACAAATATTTTTGAGCAATATAGTGCATGCGTGTCTTTGTACGATTCTGAGTCAATAACTAACAGGTCATGCTCTGGCATTGGTTGCTGCGAGATTCCAATACCACCAAGGCTATCCaacttctcttatttttcttttcctaatgtCTTCAACAAAAGCAATAGCATTATTTGGCAAGAAAACCCCTACCCATGTAGTTATGCATTCTTGGTTATAGATGGAGAATACCAGTTCTACACCACTCGTACTGACCTCCTCAACCTCAGCAGCGACACCACGTTTCCTGTGGTTGTGGATTGGGCAGTGGGAAACAACAAGTGCCAAGATGCTAAGAGTGCTTCTAGTTATGCTTGTAAGTCGGACCATAGTGAATGTTACGATGCAAAGGTGGGACAAGGTTACCTTTGTAACTGCTCAAGTGGTTTTCGGGGAAATCCTTACATCTCGGATGGTTGCCGagatgttaATGAATGCGAGGAATCCAACGACTGTTCTGAGGACACAAAGTGCGTCAACTCTCCTCCTGGGAGCTATAGTTGTTCTTGTCCAAAAGGATATGAAGGAGATGGGAAAATTAATGGAACAGGATGCAAATTTGGGACTAACCGCATAATCATAATTGCTTTGACAATTAAAACACAACCCATGTCAAAGCCACACTGTCTAACAAAATGTGGCAACGTCACCATTCCTTTCCCATTTGGCATTACTGAGCCTTGTTCCCTCAACGCCTCATTTCTCATCACCTGCAACCAAACCTCTCCTAATTCATCACCCACCCCGTTCTTGGTGAAACAAAATATCACGACAAGACTATTTTCCTTGCCACATCATATGCGTGTGCTAGACATCTCCCTTGATGGCGAACTGAACATTTCATTGCCAGTAGCCACAAATTGCATCAATCACAGTATTCCGGATCAATATGGTTGGCTCTTGGACCTGACGCCTTTTCACCTATCATTCGCACGAAACAAGTTAACCGTGCTGGGAACTGACACGGCTGGAGTAATAAGGTGGGAAGATATAGAGGGATACCAGTCAGCATCATCATGTATGTCTTTCTCTTTGTTCCACAATGAGAAGCCATCATATAACCAGCCATGCTCTGGCACTTTTTGTTGCGAGACTCCGATACAACAAAGGCTATCGAAATTCTACTATAGGTCTTTTGCAAATATCTTCAACAATAGCTTTGTAAATATCAACAATAGCTACCGCCAACAGCTTCAATCCTACCCATGCGGTTATGCATTCCTAGTTGAGGACGGAGCCTACAAATTCTCCCCCACAGACCTCTCCAACCTTAGCAGCAACAACACTTTTCCTGTGGTTGTGGATTGGGCTGTGGGGAACACATGCCAAGATGATGAGAAGAATGCTTCAAGTTATCTGTGTAAGTCAAACTATAGTGAATGTCACAATGCAGAGAAAGGACAAGGTTACCATTGTAAATGCTCTAGTGGTTTTCGAGGAAATCCTTACCTCCCAGATCCAGATGGTTGCCAAGatATTCACGAATGCGCCGAGGAATCCCACGATTGTTTAAAGGAGGCATCATGCATAGACTTTCCTGGGAACTACAGTTGTTCTTGTCCAAAGGATATGAAGGAGATGggaaaaataatggaatag 2067 0.4267 MDKQLQMAVHSKQLLLVAFLIVATKSQPISKPDCQTDCGNVTIPFPFGLTENCSLNSSFLITCNHTLSSHTPFLKNNHFSPGVRVLDISLDGELNISLPVARDCIYYSELVATGYSFDLRPFHLSSTRNKLTVVGGNTVGIVGPTNIFEQYSACVSLYDSESITNRSCSGIGCCEIPIPPRLSNFSYFSFPNVFNKSNSIIWQENPYPCSYAFLVIDGEYQFYTTRTDLLNLSSDTTFPVVVDWAVGNNKCQDAKSASSYACKSDHSECYDAKVGQGYLCNCSSGFRGNPYISDGCRDVNECEESNDCSEDTKCVNSPPGSYSCSCPKGYEGDGKINGTGCKFGTNRIIIIALTIKTQPMSKPHCLTKCGNVTIPFPFGITEPCSLNASFLITCNQTSPNSSPTPFLVKQNITTRLFSLPHHMRVLDISLDGELNISLPVATNCINHSIPDQYGWLLDLTPFHLSFARNKLTVLGTDTAGVIRWEDIEGYQSASSCMSFSLFHNEKPSYNQPCSGTFCCETPIQQRLSKFYYRSFANIFNNSFVNINNSYRQQLQSYPCGYAFLVEDGAYKFSPTDLSNLSSNNTFPVVVDWAVGNTCQDDEKNASSYLCKSNYSECHNAEKGQGYHCKCSSGFRGNPYLPDPDGCQDIHECAEESHDCLKEASCIDFPGNYSCSCPKDMKEMGKIME 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2934 688 CDD EGF_CA 648 677 - -
Ssu1g2934 688 SMART egfca_6 298 342 IPR001881 GO:0005509
Ssu1g2934 688 SMART egfca_6 648 686 IPR001881 GO:0005509
Ssu1g2934 688 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247
Ssu1g2934 688 Pfam Wall-associated receptor kinase galacturonan-binding 365 432 IPR025287 GO:0030247
Ssu1g2934 688 Gene3D Laminin 595 685 - -
Ssu1g2934 688 Gene3D Laminin 247 341 - -
Ssu1g2934 688 CDD EGF_CA 298 333 - -
Ssu1g2934 688 PANTHER OSJNBA0016N04.9 PROTEIN 9 305 - -
Ssu1g2934 688 PANTHER OSJNBA0016N04.9 PROTEIN 352 656 - -
Ssu1g2934 688 SMART egf_5 301 342 IPR000742 -
Ssu1g2934 688 SMART egf_5 597 647 IPR000742 -
Ssu1g2934 688 SMART egf_5 250 297 IPR000742 -
Ssu1g2934 688 SMART egf_5 651 688 IPR000742 -
Ssu1g2934 688 PANTHER OSJNBA0016N04.9 PROTEIN 9 305 - -
Ssu1g2934 688 PANTHER OSJNBA0016N04.9 PROTEIN 352 656 - -
Ssu1g2934 688 Pfam Calcium-binding EGF domain 648 679 IPR001881 GO:0005509
Ssu1g2934 688 Pfam Calcium-binding EGF domain 298 334 IPR001881 GO:0005509
Ssu1g2934 688 ProSiteProfiles EGF-like domain profile. 298 333 IPR000742 -
Ssu1g2934 688 SUPERFAMILY EGF/Laminin 296 334 - -
Ssu1g2934 688 SUPERFAMILY EGF/Laminin 641 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2934 Ssu-Chr1 77058984 77146252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2934 355 677 Receptor kinase-like Gene Family AT1G21230 34.234 1.05e-38 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2934 - - gsj:114410917 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2934 1 77058984 77146252 Ssu1g2934 1 77058984 77146252 ECH