Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01067 ATGGTGCTGGGGAAGAATTCACGAGGCGAGGGGAGGAAGTTGTCAAACTACTGTTCAACGGTTTCTATAGCTGTGTTTGTTGCATGTTGTTTAGTTGGTGTATGGATTATAATGTCATCCATTGTTCCAATTCAGAATTCAGTCATTCAGGTATCTGAGACCATTAATGATGTTAAGAATGTAGCAAGTGATTCAAAGCAATTTGAAGACAAATCTGGTGATATGCTAGAAGAATCAACAGGGCGAGATAGCCAGACTCATAAATCTCAGAGTGACAGCCATCCAGAAAACCAGGATGACCAAAAGAGAATTGAAAAAGTATTTGATAATATGGCTGAAGAAAACCAGGACGTTGTTAGGGACAACTTGGATGAAAATAATGATTTGGAGAAGGGTCCTGGGAATACTATTGAGGAGAATGATCAAATGAAACATGTGGAGCCAAACACTGACGAGAAGGGGAAAGAATCAGATGGAACCTTAAATTCTGAATCTGCAGAAACAAAAACTTTGAATGGTCAAATTCATGATGATGAACTCAGAGGATCAATGGAAACTTTAGATGAAAAAGGATCTGACAAGAGTGCAAATGATAACAAATTAGGGACAATGGATGAGATGGTTCGTGAGACTGAGGAGGAGAAAATCAAGAAAAGTCTGCATTCAGAGACAACACATAGTACTACTGGAGAGAGTAACACAGAAATCCATGAAAATAGTCCAGCTTCAAAAGAAAGTGGTACACCATCTGAATCTTTGATTGAAACTAGCACAGAAAGTGGAACATGGTCAACTCAAGCTGCAGAATCACAGCATGAGAAGGAATCACAGAAGTCTTTGATTTCTTTTGAAAGCAGATATGACTGGAAACTTTGCAACACAACTACAGGATCTGAGTACATTCCTTGTCTTGACAATTGGAAAGCAATTAGAAAGCTTAAAAGCATAAAGCACTATGAACATCGTGAGAGGCACTGTCCTGATGAAGCTACCACTTGTCTTGTTTCTCTGCCTGAGGGCTATAGAAGCCCAATCAAGTGGCCCAAAAGCAGGGAAATGATATGGTACAACAATGCTCCTCACACAAAGCTTGTGGAATTTAAGGGTCATCAAAACTGGGTCAAAGTTACTGGTGGATACCTTACTTTTCCAGGTGGTGGAACTCAGTTTAAACATGGCGCTCTTCATTACATTGAATTCATTCAGAAATCTCTTCCTAAAATTGCATGGGGGAAGAGAACTCGTGTGATATTGGATGTTGGGTGTGGGGTAGCCAGTTTTGGAGGCTATCTGTTTGAAAAAGATGTTCTAACCATGTCATTTGCTCCAAAAGATGTGCATGAGGCACAAGTGCAATTTGCACTGGAACGGGGAATTCCTGCTACATTAGGAGTCATGGGCACCATAAGATTACCCTATCCTGGTTCTGTCTTTGATCTTGTCCACTGTGCTCGTTGTAGAGTTCCTTGGCACATAGAAGGTGGCAAGTTACTCTTAGAGCTTAATCGGGTCTTGCGACCTGGAGGACACTTTGTATGGTCTGCTACTCCAGTGTACCAAAAGGATCCAGAAGATGTTGAGATTTGGAAAGCCATGGGTGAAATTACAAAGTCAATGTGCTGGGATCTGGTGGTAATTGCAAAAGACAAGTTGAATGGAGTGGCAGCAGCAATATATAGAAAACCAACTGACAATGAATGCTATAACAAAAGAATAAAAAATGAGCCACCAATGTGCAACGAATCTGATGATCCAAATACAGCCTGGAATGTATCACTTCAGGCTTGTATGCACAAAGTGCCCGTTGAAGCATCAGAGCGTGGATCAATCTGGCCAGAGCAATGGCCACTGAGGTTGGAAAAACCACCTTACTGGATAGACTCTCAGGCTGGTGTTTATGGAAGGGCTGCTTCCGTCGAATTCACTGCTGATTACAAGCATTGGAAAAACGTTCTTGTCCACTCTTATTTGAATGGAATGGGTATCAATTGGTCTTCAGTAAGAAATGTCATGGACATGAGAGCTGTTTATGGAGGGTTTGCTGCAGCACTCAGAACCCTGAAAGTGAATGTTTGGGTAATGAATGTGGTTCCAATTGATTCTCCAGACACACTGCCAATAATATATGAACGTGGACTATTCGGTATTTATCATGATTGGTGTGAATCCTTCAGTACTTACCCCAGATCTTATGATCTTCTCCATGCCGATTCTATATTGTCAACACTCAAGAAAAAGTGCAACATAGTAACGGTGATTGCAGAAGTTGACAGGATCCTGAGACCAGAAGGATATTTGATCATAAGAGACAATGTTGAAACCATTGGTGAGATAGAGAGCATGGCTAAATCTCTACACTGGGATATTCGGTTGACATATTTTAAAAATGGGGAGGGATTACTTTGCATTCAGAAAACATTCTGGCGTCCAACAAAGGTTGAAACTGTTGTATCAGCCATTGCATGA 2466 0.4104 MVLGKNSRGEGRKLSNYCSTVSIAVFVACCLVGVWIIMSSIVPIQNSVIQVSETINDVKNVASDSKQFEDKSGDMLEESTGRDSQTHKSQSDSHPENQDDQKRIEKVFDNMAEENQDVVRDNLDENNDLEKGPGNTIEENDQMKHVEPNTDEKGKESDGTLNSESAETKTLNGQIHDDELRGSMETLDEKGSDKSANDNKLGTMDEMVRETEEEKIKKSLHSETTHSTTGESNTEIHENSPASKESGTPSESLIETSTESGTWSTQAAESQHEKESQKSLISFESRYDWKLCNTTTGSEYIPCLDNWKAIRKLKSIKHYEHRERHCPDEATTCLVSLPEGYRSPIKWPKSREMIWYNNAPHTKLVEFKGHQNWVKVTGGYLTFPGGGTQFKHGALHYIEFIQKSLPKIAWGKRTRVILDVGCGVASFGGYLFEKDVLTMSFAPKDVHEAQVQFALERGIPATLGVMGTIRLPYPGSVFDLVHCARCRVPWHIEGGKLLLELNRVLRPGGHFVWSATPVYQKDPEDVEIWKAMGEITKSMCWDLVVIAKDKLNGVAAAIYRKPTDNECYNKRIKNEPPMCNESDDPNTAWNVSLQACMHKVPVEASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVLVHSYLNGMGINWSSVRNVMDMRAVYGGFAAALRTLKVNVWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADSILSTLKKKCNIVTVIAEVDRILRPEGYLIIRDNVETIGEIESMAKSLHWDIRLTYFKNGEGLLCIQKTFWRPTKVETVVSAIA 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01067 821 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 299 796 IPR004159 GO:0008168
Cca03g01067 821 PANTHER METHYLTRANSFERASE PMT25-RELATED 3 818 - -
Cca03g01067 821 MobiDBLite consensus disorder prediction 225 270 - -
Cca03g01067 821 Gene3D Vaccinia Virus protein VP39 389 546 IPR029063 -
Cca03g01067 821 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 322 576 IPR029063 -
Cca03g01067 821 MobiDBLite consensus disorder prediction 64 100 - -
Cca03g01067 821 MobiDBLite consensus disorder prediction 171 224 - -
Cca03g01067 821 MobiDBLite consensus disorder prediction 117 277 - -
Cca03g01067 821 CDD AdoMet_MTases 417 512 - -
Cca03g01067 821 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Cca03g01067 821 MobiDBLite consensus disorder prediction 117 162 - -
Cca03g01067 821 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 3 818 IPR004159 GO:0008168
Cca03g01067 821 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 639 787 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01067 Cca-Chr3 25879095 25885655 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01067 - - gmx:100793395 1494.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01067 03 25879095 25885655 Cca03g01067 03 25879095 25885655 ECH