Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0209 ATGGCTATGGGGAAGTATTCTCGGGTTGACGGACGGCGGTCATCAAACTACTGTTCAACAATTGCTATTGTTGTGTTTGTCGGTGTTTGCCTGGTTGGGGTGTGGATGATGATGTCATCATCCATTGTTCCCATTCAGAATTCAGATTTAGTGTCCGATGATACTCCACATGAGGTGCAGAAAAAGATAGATGACAATGATTCTACGCAATTTGAAGACAGTTCGGGTAATTTTCCATTGGATGCAGCAAAAGGAGAAAGTAATACTGACAATTCTCAGGATGAAAGTGATACTGGCAATTCTCAGGGTGGAAGCAATATTGATGCCCAAGATAACCAAACCCTGCCTGATAAAGGGTCAGAGAATACTGTGGAGGAAAACCAGGAAGCAACCATTAAGGAGAGTTCTAAAGATAGGACTGAGAATGAAGAGGAGCCCAAGATACACAGGGAACAAAATTCTGGAGATGGGGAACAAAATGCTGGAGATGGAGAATTGAATTCAGAAACTGGAGAAACAAAAACTGAAGGTGGTGAAACAAATGAGGCAGAGCAGGGAGGATCGGGGGAGAGCACAGATGAAAATAAATCAGACTCAAATGAGGATGAGAAAAAATCAGATACAAATGAGAATTCAGTTGATATAGCTTTGGAAAATAAAGCTGACAGTCAGAATGAGGAGGAGAAGGTTGAGCAAAATCAAGAGGAGAATGTTGAGCGGAATCAAGAGGACAATTCAGAACAAAGTGCTGGGGAGGAGCACATTGAAATCCAGGCAAAAGATCAGGCTTCAAATGAGGTTTTCCCTGCTGGGGCCCAGTCAGAGATTTTGAATGAAAGTAATACTGGAAATGGGGCTTGGTCAACACAAATGGTAGAGTCAAAGAATGAGAAGGAATCACTAGAATCTACAATATCTAAGCCAAATGGTTATGGTTGGAAACTCTGCAATGTCACTGCTGGCCCAGACTACATCCCGTGCCTTGACAATGTGCAAACTATTAGAAGACTTCCAAGTACAAAGCACTATGAACATAGAGAGAGGCACTGCCCTGATGAGGCTCCTACCTGTCTTGTTCCTTTGCCTGGAGGATATAAACGTCCAGTTCAGTGGCCAACAAGCCGGGAAAAGATCTGGTTCAATAATGTTCCCCACACAAAGCTTGCTGTGGTCAAAGGCCATCAAAATTGGGTTAAAGTTACTGGTGAATACCTTACTTTTCCTGGTGGTGGAACTCAGTTTACGCACGGTGCTCTTCATTACATTGATTACATCCAAAAAACTCTTCCTGATATTGCATGGGGGAAGCAAAGCCGTGTGATATTGGATGTTGGGTGTGGTGTGGCCAGCTTTGGAGGTTATATTTTTGAAAGAGATGTGCTTGCAATGTCATTTGCTCCCAAGGATGAGCATGAAGCTCAAGTGCAATTTGCACTTGAACGGGGAATCCCTGCTATATCAGCTGTTATGGGAACCACGAGACTGCCATTCCCCAGTAGGGTCTTTGACGTTGTCCACTGTGCACGTTGCAGGGTTCCTTGGCATATTGAAGGTGGTAAACTTCTCTTAGAGCTGAACCGTGTCTTGCGGCCTGGTGGTTACTTTGTGTGGTCTGCTACTCCAGTTTACCGGAAAGTTCCTGAAGATGTTGGCATTTGGAACGCCATGTCTGAAATAACAAAGAAAATTTGCTGGGATCTGGTGGCAATGAGCAAGGATAGTTTGAATGGAATAGGTGCAGCAATATACAGAAAGCCAACTTCCAATGAGTGCTATGAGAAAAGGCCGCGAAATGAGCCTCCACTGTGTGAAGAATCTGACAATGCAGATGCAGCCTGGAATATACCCCTTCAAGCATGCATGCATAAGGTGCCGGTACTTACCTCAGAACGTGGGTCTCAGTGGCCAGAGCAATGGCCACTCAGAGTGGAGAAAGCGCCTAACTGGTTGAAGAGTTCTCAGGTTGGAGTCTACGGCAAGGCTGCTCCAGAGGACTTTACTTCTGACTATGAGCACTGGAAAACTGTTGTCTCCTCATCATATTTGAAAGGGATGGGAATCAAATGGTCTTCTGTTAGGAATGTCATGGACATGAAAGCTGTATATGGGGGATTTGCTGCCGCACTGAAAGACTTGAAAGTGTGGGTCATGAACGTAGTCCCAATTAACTCCCCAGACACACTCCCAATTATCTTTGAACGGGGGTTATTTGGAATATATCATGATTGGTGTGAATCGTTTAGCACCTATCCCAGATCTTATGATCTTGTTCATGCTGATCATCTCTTCTCTGATCTGAAAAAGAGGTGCCAGTTAACAGCAGTAATTGCAGAAGTTGATAGGATCCTAAGGCCAGAAGGAATGCTTATAGTACGGGACAATGTTGAGACTGTAAGTGAGGTGGAGAGCATGGCAAAGTCTCTACAGTGGGAGGTCCGGTTGACATACTCAAAGGACAAAGAAGGTCTTCTTTGTGTTAAGAAGACGTTTTGGCGCCCCACAGAGACACAGACCATCAAATCGGCTATTGCTTAA 2535 0.4446 MAMGKYSRVDGRRSSNYCSTIAIVVFVGVCLVGVWMMMSSSIVPIQNSDLVSDDTPHEVQKKIDDNDSTQFEDSSGNFPLDAAKGESNTDNSQDESDTGNSQGGSNIDAQDNQTLPDKGSENTVEENQEATIKESSKDRTENEEEPKIHREQNSGDGEQNAGDGELNSETGETKTEGGETNEAEQGGSGESTDENKSDSNEDEKKSDTNENSVDIALENKADSQNEEEKVEQNQEENVERNQEDNSEQSAGEEHIEIQAKDQASNEVFPAGAQSEILNESNTGNGAWSTQMVESKNEKESLESTISKPNGYGWKLCNVTAGPDYIPCLDNVQTIRRLPSTKHYEHRERHCPDEAPTCLVPLPGGYKRPVQWPTSREKIWFNNVPHTKLAVVKGHQNWVKVTGEYLTFPGGGTQFTHGALHYIDYIQKTLPDIAWGKQSRVILDVGCGVASFGGYIFERDVLAMSFAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPSRVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGYFVWSATPVYRKVPEDVGIWNAMSEITKKICWDLVAMSKDSLNGIGAAIYRKPTSNECYEKRPRNEPPLCEESDNADAAWNIPLQACMHKVPVLTSERGSQWPEQWPLRVEKAPNWLKSSQVGVYGKAAPEDFTSDYEHWKTVVSSSYLKGMGIKWSSVRNVMDMKAVYGGFAAALKDLKVWVMNVVPINSPDTLPIIFERGLFGIYHDWCESFSTYPRSYDLVHADHLFSDLKKRCQLTAVIAEVDRILRPEGMLIVRDNVETVSEVESMAKSLQWEVRLTYSKDKEGLLCVKKTFWRPTETQTIKSAIA* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0209 844 MobiDBLite consensus disorder prediction 220 255 - -
Vvi18g0209 844 MobiDBLite consensus disorder prediction 52 255 - -
Vvi18g0209 844 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 21 832 IPR004159 GO:0008168
Vvi18g0209 844 FunFam probable methyltransferase PMT23 413 597 - -
Vvi18g0209 844 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 665 812 IPR029063 -
Vvi18g0209 844 MobiDBLite consensus disorder prediction 122 156 - -
Vvi18g0209 844 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 323 827 IPR004159 GO:0008168
Vvi18g0209 844 MobiDBLite consensus disorder prediction 70 121 - -
Vvi18g0209 844 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 347 596 IPR029063 -
Vvi18g0209 844 Gene3D Vaccinia Virus protein VP39 413 576 IPR029063 -
Vvi18g0209 844 MobiDBLite consensus disorder prediction 189 211 - -
Vvi18g0209 844 Coils Coil 213 243 - -
Vvi18g0209 844 CDD AdoMet_MTases 441 536 - -
Vvi18g0209 844 Gene3D Vaccinia Virus protein VP39 737 830 IPR029063 -
Vvi18g0209 844 MobiDBLite consensus disorder prediction 54 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0209 Vvi-Chr18 1857766 1863779 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0209 - - vvi:100265973 1692.17