Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0214 ATGCCCTTTTCGCCACTCCTTCTCAGACTCAGGGACTCAGACCCAGAAATGCTTCTTCGTCAACAACACAGAGTAGTTATCTCCTCTTCACCCACCATCATGGCCTCCAAACAACTCCTCAAATCCACTCCTCTCACGCTGCCTCTTAGGTTAAACCTTTACTCACCCGTCACCATCTCCGCATTCCCTTTAAAATCCACCTCCAGAATCCTCCCAGTCTCCCTCAAAACCTCCGCCTTACCTTACACTTCCCATTCCAATGTCCCCAGACCAGTTTATTCGGAGAACCCAGAAGACACCAGTAATTTCTCCGCTCGATTCAACGTCTTGAAGAAGAAACTGGAGGCGATAGGCTTTGACACACAAATGCTTAAAACTGGGCAGTACGATAACTTACTGTGTCCCGCGTGTAAAGGTGGTTATTCAATGGAGAAAAGCTTATCTCTTGTCATCACTTTAGATGGGAATTGTGCTGTATGGACATGTCATCGAGGAAAATGTGGGTGGAGAGGTGACACACGGGCCTTTGCAAATGGCAGATCATCATATGGAAGGTTGAACCAAATTACCAAAATTAAGCCCAAAAGAGAAATCACAGAAAAGAGTCTGGGTTTAGAACCACTATGTAGGGAGCTAATTGCATATTTTGGAGAGCGAATGATATCAGAAAAAACATTGGCAAGAAATTCTGTCATGCAGAAAACATATGGCGATGAGTTTATTATTGCATTTACTTATCGAAGAAATGGGGTGTTTGTGAGTTGCAAATATCGGGATGTTAACAAGAACTTTTGGCAGGAAGAGGATACTGAAAAAATATTCTATGGTGTGGATGATATAAAGGCAGCAAGTGATATAATCATTGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTAATGGAGCACCTGCATCAGTTTCTACAAAAGTGTTCAAATCTGATGAAGAGGACACAAAATATCAGTATCTATGGAACTGCAAGGAGTATCTGGAGAAGGCATCTCGCATTATACTTGCAACTGATGGGGATTCACCTGGTCTTGCCTTAGCTGAAGAACTTGCACGCCGCCTTGGAAGAGAAAGATGTTGGCGAGTAAAATGGCCTAAGAAAAATGAAGTTGATCATTTCAAAGATGCGAATGAGGTGCTTATGTATTTAGGACCTGATGCTCTGAAAGAAGTAATTGAGAATGCTGAGTTATATCCTATTCAAGGATTGTTCAACTTTAGCCATTACTTTGATGAGATTGATGCATATTATCATCAAGCTCTTGGTTTTGAGCTTGGTGTTGCAACTGGATGGAGGGGTCTGAATGGATTATACAATGTAAGCACAATATTTCATTTATCCTACTCAGTAGCTGAACCTGAGAAAGGGTTAGTTCCATATGCTTGTTCACTGCCTTTATCGATCATCCATCCTGTGACTGGAAGATTAGTTTAA 1476 0.4167 MPFSPLLLRLRDSDPEMLLRQQHRVVISSSPTIMASKQLLKSTPLTLPLRLNLYSPVTISAFPLKSTSRILPVSLKTSALPYTSHSNVPRPVYSENPEDTSNFSARFNVLKKKLEAIGFDTQMLKTGQYDNLLCPACKGGYSMEKSLSLVITLDGNCAVWTCHRGKCGWRGDTRAFANGRSSYGRLNQITKIKPKREITEKSLGLEPLCRELIAYFGERMISEKTLARNSVMQKTYGDEFIIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEEAGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYLEKASRIILATDGDSPGLALAEELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDALKEVIENAELYPIQGLFNFSHYFDEIDAYYHQALGFELGVATGWRGLNGLYNVSTIFHLSYSVAEPEKGLVPYACSLPLSIIHPVTGRLV* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0214 491 Gene3D - 270 413 - -
Vvi18g0214 491 PANTHER T7-LIKE MITOCHONDRIAL DNA HELICASE 81 454 IPR027032 GO:0003697|GO:0043139
Vvi18g0214 491 SMART toprim5 284 373 IPR006171 -
Vvi18g0214 491 Pfam Toprim domain 285 376 IPR006171 -
Vvi18g0214 491 SUPERFAMILY DNA primase core 215 395 - -
Vvi18g0214 491 CDD TOPRIM_primases 286 379 IPR034154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0214 Vvi-Chr18 1934332 1948604 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0214 K17680 - vvi:100247126 917.146