Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma18g00097 . . . . . . . . . . . . . . . . . . Lasa5g02656 . . . . . . . . . . . . . Mepo3g06255 . Mesa9g03728 . . . . . . . Phco2g02944 . . . Psa5g2197 . . . . . . . Pumo1g00419 . Pvu1g2665 . Rops11g03759 . Seca6g01777 . Spst1g01925 . . . . . . . Trre5g03168 . . . Vian2g03153 . . . Vimu6g01548 . Viun1g03418 . Vivi3g03305 . . .
Vvi1g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01776 . . . . . . . . . . . . . . . Gma08g00938 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car07g02111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1316 . . . . . . . . . Aev03g2467 . Ahy13g4441 . Aip03g04926 . . . . . . . . . . . . . . . . . . . . . Dod04g1994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1317 . . . . . . . . . Aev03g2468 . Ahy13g4442 . Aip03g04927 . . . Amo13g5583 . . . . . . . . . . . Car07g02085 . . . . . Dod04g1995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4148 . . . . . . Mtr3g2838 Mtr8g2769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g4718 Tpr3g1336 . . . Tsu02g01235 . . . . . . . . . . . .
Vvi1g1318 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g4149 . . . . . . . Mtr8g2770 . . . . . . . Psa7g1843 . . . . . . . . . . . . . . . . . . . . . Tpr3g1335 . . . Tsu02g01234 . . . . . . . . . . . .
Vvi1g1320 . . . . . . . . . Aev03g1428 . Ahy20g1021 . Aip10g01077 . . . Amo20g0953 . . . . . . . . . . . . . . . . . Dod04g0569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g2771 . . . . . . . Psa7g1841 . . . . . . . . . . . . . . . . . . Sto3g2925 . . Tpr3g1333 . . . Tsu02g01233 . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1311 Chr1 19242156 19244752 -
Vvi Vvi1g1312 Chr1 19257458 19258258 +
Gma Gma18g00097 Chr18 767107 768259 +
Lasa Lasa5g02656 Chr5 495892512 495893189 +
Mepo Mepo3g06255 Chr3 76690292 76691368 +
Mesa Mesa9g03728 Chr9 68925961 68926401 +
Phco Phco2g02944 Chr2 58366964 58367990 -
Psa Psa5g2197 Chr5 173189788 173191230 -
Pumo Pumo1g00419 Chr1 5874108 5875137 -
Pvu Pvu1g2665 Chr1 51404241 51406283 -
Rops Rops11g03759 Chr11 71312666 71313596 +
Seca Seca6g01777 Chr6 73704040 73704930 +
Spst Spst1g01925 Chr1 27521614 27522655 +
Trre Trre5g03168 Chr5 27238302 27239054 +
Vian Vian2g03153 Chr2 52033297 52034397 -
Vimu Vimu6g01548 Chr6 14508276 14509197 +
Viun Viun1g03418 Chr1 41272454 41274488 -
Vivi Vivi3g03305 Chr3 55899464 55900612 -
Vvi Vvi1g1313 Chr1 19281786 19282972 +
Bva Bva06g01776 Chr06 12286642 12287907 -
Gma Gma08g00938 Chr08 7908149 7909708 -
Vvi Vvi1g1314 Chr1 19287883 19288086 +
Vvi Vvi1g1315 Chr1 19296065 19297360 +
Car Car07g02111 Chr07 26576591 26577799 +
Vvi Vvi1g1316 Chr1 19335593 19336894 -
Aev Aev03g2467 Chr03 25747746 25749051 -
Ahy Ahy13g4441 Chr13 144498208 144500083 -
Aip Aip03g04926 Chr03 133843696 133845576 -
Dod Dod04g1994 Chr04 43405725 43407044 -
Vvi Vvi1g1317 Chr1 19339944 19341220 +
Aev Aev03g2468 Chr03 25752136 25753357 -
Ahy Ahy13g4442 Chr13 144502827 144504232 -
Aip Aip03g04927 Chr03 133848206 133849602 -
Amo Amo13g5583 Chr13 157547512 157554317 -
Car Car07g02085 Chr07 25629770 25644862 +
Dod Dod04g1995 Chr04 43411643 43413016 -
Mal Mal7g4148 Chr7 108305508 108306870 +
Mtr Mtr3g2838 Chr3 42366168 42373645 +
Mtr Mtr8g2769 Chr8 38361864 38363552 +
Tpr Tpr2g4718 Chr2 52559200 52561170 +
Tpr Tpr3g1336 Chr3 11832645 11834485 -
Tsu Tsu02g01235 Chr02 10478481 10479815 -
Vvi Vvi1g1318 Chr1 19365408 19366095 +
Vvi Vvi1g1319 Chr1 19370001 19372078 +
Mal Mal7g4149 Chr7 108309335 108310657 +
Mtr Mtr8g2770 Chr8 38370835 38372270 +
Psa Psa7g1843 Chr7 133056660 133058385 +
Tpr Tpr3g1335 Chr3 11828159 11829723 -
Tsu Tsu02g01234 Chr02 10473587 10474423 -
Vvi Vvi1g1320 Chr1 19398867 19400168 +
Aev Aev03g1428 Chr03 14702738 14711948 -
Ahy Ahy20g1021 Chr20 15113760 15118949 -
Aip Aip10g01077 Chr10 14388009 14391896 -
Amo Amo20g0953 Chr20 15892711 15897962 -
Dod Dod04g0569 Chr04 8134090 8137955 +
Mtr Mtr8g2771 Chr8 38375324 38376256 +
Psa Psa7g1841 Chr7 133015733 133018110 +
Sto Sto3g2925 Chr3 33953603 33955992 +
Tpr Tpr3g1333 Chr3 11824622 11827617 -
Tsu Tsu02g01233 Chr02 10466207 10467654 -