Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01548 ATGGCACACGCTTTGTCCTCTAATCTGGCTCTTAACCTTCCCACATCGAGGTATCTTCTTCATTCCAGACCAACCCAGTTGAAGCCAGCGAAGTTCATGGTGATGGGGGATGCAAGAGAAAAGCTTGACCATATCCCAAAACCCAACAAGAACCACCATCCTCTCCCCAAGAAGAAAGTTGCCCCTGCTGCACCCATAGGGTTGTGGGACAGGTTTCCTACGGCGAGAACAATGCAAGAGATGATGGAGACGATGGAGAGGATGATGGAAGACCCTTTTGCATTTAGCACGCTTGAGTGGCCTTCGTCACCCTTACCGAGTGAGGGTGTGGGAGGGTACAGAAGAAGAGGAAGGGCACCATGGGAAGTGAAAGAGGGAGAGAGTGAGTACAAGATGAGGTTTGACATGCCTGGGATGAACAAAGAGGATGTGAAAGTTTGGGTGGAGGAAAAAATGCTTGTGGTTAAAGCAGAAAAGGCACCAAAGAAGAAAGAGATGGTTCAACAGGATCAACGACCGAGGCAACCGGAAGAGGAAGAAGAAGAGGGATGGTCTGCAAAGAGCTATGGCAGGTATAGCAGTAGGATTGCTCTGCCCGACAATGTCCAGTTTGAGAATATTAAGGCTGAGGTTAAGGATGGTGTTCTCTACATAGCCATTCCCAAAGCCAATACTAGTTACTCCAACATCCTAGATATCCAAGTTCAATGA 711 0.481 MAHALSSNLALNLPTSRYLLHSRPTQLKPAKFMVMGDAREKLDHIPKPNKNHHPLPKKKVAPAAPIGLWDRFPTARTMQEMMETMERMMEDPFAFSTLEWPSSPLPSEGVGGYRRRGRAPWEVKEGESEYKMRFDMPGMNKEDVKVWVEEKMLVVKAEKAPKKKEMVQQDQRPRQPEEEEEEGWSAKSYGRYSSRIALPDNVQFENIKAEVKDGVLYIAIPKANTSYSNILDIQVQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01548 236 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 112 236 IPR002068 -
Vimu6g01548 236 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 21 236 IPR044587 GO:0009408
Vimu6g01548 236 CDD ACD_sHsps-like 122 222 - -
Vimu6g01548 236 MobiDBLite consensus disorder prediction 160 186 - -
Vimu6g01548 236 SUPERFAMILY HSP20-like chaperones 102 234 IPR008978 -
Vimu6g01548 236 Gene3D - 68 235 IPR008978 -
Vimu6g01548 236 Pfam Hsp20/alpha crystallin family 123 236 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01548 Vimu-Chr6 14508276 14509197 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01548 K13993 - gmx:100811966 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01548 6 14508276 14509197 Vimu6g01548 6 14508276 14509197 ECH