Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1312 ATGTCTCAGTCTCTTTCGAACCTCTGCAACATCTCTCTCCCTTTCCCATGTGAGAGAACCACAGCCGCTGTTACTTTTTCAAGGTTTCCCCAAGCAAATAGGGTTTGCTACAAGTGCAGTGGCATCAAGGCCATGGCAACTGAGGGAAGAGACAATCTTGACCACTTGCGGAGGGCAGGCAAACATAATCCCCAAAAGAAGAGAGCCCCCCAAGTTGCACCCATTGGGTTGTGGGATAGGTTTCCAACAGCAAGAACTGTGCAGCAGATGATGGAGACGATGGAGAGGATGATGGAGGACCCTCTTGCCTACAGTGGTGGGTGGCCCAGTGAGAGTGGTGGTTACAGTAGGGGAAGGACTCCATGGGAGATTAAAGAAGATGAGGGAGAATACAAGATAAGGTTTGACATGCCAGGTATGACCAAGGATGATGTGAAGTTGTGGGTTGAGGAGAAAATGCTGGTCATCAAGGCTGAGAAGATGAGTGGGACTGAAGGAAATGGGGAGGAAGATGAGGGAGCATGGTCTGCAAAGAGCTACGGCAGATACAATAGCAGGGTTGCATTGCCTGAGAATGTCCAATTTGAGAAGATTAAAGCAGAGGTCAAAGATGGAGTCTTGTATATAACCATTCCAAAGGCCAGTGACAACCCCAAGATTTTGGATATCAATGTGGAATAA 681 0.4802 MSQSLSNLCNISLPFPCERTTAAVTFSRFPQANRVCYKCSGIKAMATEGRDNLDHLRRAGKHNPQKKRAPQVAPIGLWDRFPTARTVQQMMETMERMMEDPLAYSGGWPSESGGYSRGRTPWEIKEDEGEYKIRFDMPGMTKDDVKLWVEEKMLVIKAEKMSGTEGNGEEDEGAWSAKSYGRYNSRVALPENVQFEKIKAEVKDGVLYITIPKASDNPKILDINVE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1312 226 CDD ACD_sHsps-like 123 213 - -
Vvi1g1312 226 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 113 226 IPR002068 -
Vvi1g1312 226 Gene3D - 76 225 IPR008978 -
Vvi1g1312 226 Pfam Hsp20/alpha crystallin family 123 218 IPR002068 -
Vvi1g1312 226 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 14 225 IPR044587 GO:0009408
Vvi1g1312 226 SUPERFAMILY HSP20-like chaperones 95 222 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1312 Vvi-Chr1 19257458 19258258 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1312 K13993 - vvi:100261354 463.381