Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03168 ATGGCACACTCTTTATCCTCAAATCTAGCTCTTAACCTTGCCATAATTTCCAAGACTTCATCTAGTCCTTCAAGAACACCAACCTATTTGAAACCACTCAGAATCAGAGCCGTGACAGGGGATGCAAAAGAAAGACTCCAAAAGAGACTTGTTCCTTCCCCACCCATAGGGCTATGGGATAGATTTCCAACAGCAAAGACAGTGCATGAGATGATGGAAACAATGGAAAGAATGATGGAAGATCCATTTGCAATGAGCACAATTGAGTGGCCATCATCACCACTTCCGAGTGAAGGAGCTGGCGGGTATCGAAGGAGAGGAAGAACACCATGGGAGATTAAAGTAGGAGAAAATGAATACAAGATGAGGTTCGATATGCCTGGTATGAACACAGAGGATGTGAAAGTTTGGGTGGAAGAGAAGATGTTGGTGGTAAAAGCTGAAAAGGAACCGAAGAAGAAACATAGTACTATGCCACAAAACGGAGAAGAAGATGAAGAATGGTCTTCTAAGAGCTATGGAAGATATAGTAGCAGAATTTCTTTGCCTGAGAATGTGCAGTTTGAGAGTATTAAGGCAGAGGTTAAGGATGGTGTTCTTTACATAACTATTCCTAAGGCTACTAGTTATTCCCAAGTACTTGACATTAGTGTTCAATGA 660 0.4167 MAHSLSSNLALNLAIISKTSSSPSRTPTYLKPLRIRAVTGDAKERLQKRLVPSPPIGLWDRFPTAKTVHEMMETMERMMEDPFAMSTIEWPSSPLPSEGAGGYRRRGRTPWEIKVGENEYKMRFDMPGMNTEDVKVWVEEKMLVVKAEKEPKKKHSTMPQNGEEDEEWSSKSYGRYSSRISLPENVQFESIKAEVKDGVLYITIPKATSYSQVLDISVQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03168 219 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 102 219 IPR002068 -
Trre5g03168 219 CDD ACD_sHsps-like 112 206 - -
Trre5g03168 219 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 44 219 IPR044587 GO:0009408
Trre5g03168 219 SUPERFAMILY HSP20-like chaperones 92 209 IPR008978 -
Trre5g03168 219 Gene3D - 63 218 IPR008978 -
Trre5g03168 219 Pfam Hsp20/alpha crystallin family 112 219 IPR002068 -
Trre5g03168 219 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03168 Trre-Chr5 27238302 27239054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03168 K13993 - gmx:100811966 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03168 5 27238302 27239054 Trre5g03168 5 27238302 27239054 ECH