Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr1g0832 . . . . . . . . . . . . . . . . . . . Vra6g1647
Pvu1g0782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0783 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0784 . . . . . . . . . . . . . . . . . Cca05g00738 . . . . . . . . . . . . . . . . . . . . . . . . . Mtr1g0827 . . . . . Pumo9g01036 . . . . . . . . . Vifa3g04121 . . . Vra6g1655
Pvu1g0785 . . Adu06g02610 . . . Ahy6g2363 . . . . . . . . . . . . . . . . . Gso19g0570 . . . . . . . . . . . . . Lja1g1598 . . . . Mtr1g0823 . . . . . . . . . . . . . . . . . . . .
Pvu1g0786 . . . . . . Ahy6g2362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g1599 . . . . Mtr1g0822 . Phco2g00854 . . . . . . . . . . . . . . . . Vivi4g04691 .
Pvu1g0787 . . Adu06g02607 . . . Ahy6g2361 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5319 . . . . . . Phco2g00864 . . Pste8g02095 . . . Spst8g01745 . . . . . . . . . . .
Pvu1g0788 . . Adu06g02676 . Aev07g1697 Ahy16g2829 . Aip06g03177 . Amo16g3585 . Apr9g0028 Arst6g03450 . . . . . . . . . . . Gso14g1139 . . . . . . . . Lasa5g04335 . . . . . Mal1g5079 . . . . . . . . . . . . Spst8g01791 . . . . . . . . . . .
Pvu1g0789 . . Adu06g02680 Aed6g0976 Aev07g1698 . . Aip06g03184 . Amo16g3589 . Apr9g0029 Arst6g03451 . . . . . . Dod08g1514 . . . . Gso14g1137 . . . . . . . . Lasa5g04334 . . . . . . . . . . . Phco2g00867 . . . . . . Spst8g01790 . . . . . . . . . . .
Pvu1g0790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00868 . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Cca Cca05g00738 Chr05 19927920 19928822 -
Pumo Pumo9g01036 Chr9 26662602 26664602 +
Vifa Vifa3g04121 Chr3 1216052420 1216054645 +
Aev Aev07g1697 Chr07 17823067 17829434 +
Pvu Pvu1g0781 Chr1 10585958 10593506 +
Mtr Mtr1g0832 Chr1 9452422 9455628 -
Vra Vra6g1647 Chr6 32290890 32295146 -
Pvu Pvu1g0782 Chr1 10643944 10644402 +
Pvu Pvu1g0783 Chr1 10809265 10810744 +
Pvu Pvu1g0784 Chr1 10828810 10833303 +
Cca Cca05g00738 Chr05 19927920 19928822 -
Mtr Mtr1g0827 Chr1 9377444 9389879 +
Pumo Pumo9g01036 Chr9 26662602 26664602 +
Vifa Vifa3g04121 Chr3 1216052420 1216054645 +
Vra Vra6g1655 Chr6 32368569 32372580 -
Pvu Pvu1g0785 Chr1 10867622 10869729 -
Adu Adu06g02610 Chr06 101885745 101888462 -
Ahy Ahy6g2363 Chr6 107546327 107549828 -
Gso Gso19g0570 Chr19 16014490 16016747 +
Lja Lja1g1598 Chr1 17339375 17342253 +
Mtr Mtr1g0823 Chr1 9309809 9312069 -
Pvu Pvu1g0786 Chr1 10898239 10903869 -
Ahy Ahy6g2362 Chr6 107541591 107546511 +
Lja Lja1g1599 Chr1 17345135 17348261 -
Mtr Mtr1g0822 Chr1 9305878 9309061 +
Phco Phco2g00854 Chr2 10109285 10116266 +
Vivi Vivi4g04691 Chr4 175513287 175515885 +
Pvu Pvu1g0787 Chr1 10937742 10949631 -
Adu Adu06g02607 Chr06 101860914 101874948 +
Ahy Ahy6g2361 Chr6 107520975 107536047 +
Lja Lja1g5319 Chr1 83600758 83612813 +
Phco Phco2g00864 Chr2 10249307 10261250 -
Pste Pste8g02095 Chr8 17757871 17777731 +
Spst Spst8g01745 Chr8 20916667 20928464 -
Pvu Pvu1g0788 Chr1 11043969 11046251 -
Adu Adu06g02676 Chr06 102954757 102962566 +
Aev Aev07g1697 Chr07 17823067 17829434 +
Ahy Ahy16g2829 Chr16 141864442 141868697 -
Aip Aip06g03177 Chr06 127590190 127602454 -
Amo Amo16g3585 Chr16 146240078 146248129 +
Apr Apr9g0028 Chr9 378125 383612 -
Arst Arst6g03450 Chr6 102230980 102234836 -
Gso Gso14g1139 Chr14 24824563 24828052 -
Lasa Lasa5g04335 Chr5 652637996 652641981 +
Mal Mal1g5079 Chr1 122346321 122347485 +
Spst Spst8g01791 Chr8 21574472 21580641 -
Pvu Pvu1g0789 Chr1 11051477 11059106 -
Adu Adu06g02680 Chr06 103000681 103007259 -
Aed Aed6g0976 Chr6 12680348 12684401 -
Aev Aev07g1698 Chr07 17842290 17849616 -
Aip Aip06g03184 Chr06 127655325 127659963 -
Amo Amo16g3589 Chr16 146327319 146335694 -
Apr Apr9g0029 Chr9 395388 399706 -
Arst Arst6g03451 Chr6 102230980 102234836 -
Dod Dod08g1514 Chr08 32530307 32542752 -
Gso Gso14g1137 Chr14 24690474 24704875 -
Lasa Lasa5g04334 Chr5 652255980 652257992 +
Phco Phco2g00867 Chr2 10312379 10329617 -
Spst Spst8g01790 Chr8 21550391 21552921 -
Pvu Pvu1g0790 Chr1 11072585 11075717 +
Phco Phco2g00868 Chr2 10333349 10369333 +