Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00896 ATGCCGTATTGCGACGTCGGAACACAGATTTCCTTCCCATCAACCTCCTCATCCGCCGTCGCACCCGCCGATGCTCACCTCAACAATGACGTCAAAATCTTCTACAGAACTTACGGTTGCGGTCCTACCAAAGTCCTCCTCATCATAGGATTGGCTGCTACACATGAAGGGTGGGGTCCACAAATCAAGGGATTAACTGGAACAAACGTAGCTAATGACGAAGACGACGCCGTTTGGAGTGGTGGTGATAATGAGGCCGGTGGTGGTATTGAGGTCTGCGCTTTTGATAATCGTGGCGTCGGTCGAAGCTCCATACCTATTAGAAAGTCTGATTATTCAACAACGATCATGGCAAAGGATGCAATTACTTTGTTGGATCATTTAGGTTGGGAAAAGGCACATGTTTTTGGGCACTCAATGGGATCTATGATAGCTTGTAAATTAGCAGCAATGGTTCCTAATAGAGTTCTCTCCTTGGCGTTGTTAAATGCAACAGGTGGGGGTTTTCAATGTCTTCCAAAGCTTGAACGGCGAACCTTCTCTGTTGCTTACCGTTTCTTGAAGGCAAAGAGTCCTGAACAAAGAGCTGAAGTTGACTTGGACACCCACTATTCACAAGAATATCTTGAGGAATATGTTGGAACTGTGAAGAGGAGAACGATATTGTATCAGCAATATGTTAAAGGCATATCAAATAGTGGAATGCAGTCTAACCATGGCTTTGATGGTCAACTCAATGCATGTTGGAAACATAAAATGACCCAGGCAGAGATCGAGGCGATAAAATCTGCAGGTTTTCTTGTTTCCATCATTCATGGCAGGGACGATATAATTGCTCAGTTATATTATGCAAGAAGACTTGCTGAGAGGTTTCATCCAACGGCCCGGCTGGTAGATCTTCATGGAGGTCATTTAGTGAGTCATGAGCGGCCTGAAGAGGTTAATCAAGCACTGTTTGACTTGATCAAGGCATCAGAAGTGAAGATGACCCCACATGATTGGACTAACTTGCCAAATACACAATCTTGGTGGAATGAGAAAAGAACGTCATTGGTCAAAACCAATCAGAATGGAAGCAACGTCTCCATGAAATCCTACTTAACAGAAAAACTGCATCTCTGCATACTATACTTCCTTAGCCTCCTTATTATGATATTTGAATTTGGAAGAAGGCTTGTGTGGAGCTTTAAGCCGGCTCGAATTGGAACTTCCACCACATACATTGAAAGTCAATAA 1236 0.4369 MPYCDVGTQISFPSTSSSAVAPADAHLNNDVKIFYRTYGCGPTKVLLIIGLAATHEGWGPQIKGLTGTNVANDEDDAVWSGGDNEAGGGIEVCAFDNRGVGRSSIPIRKSDYSTTIMAKDAITLLDHLGWEKAHVFGHSMGSMIACKLAAMVPNRVLSLALLNATGGGFQCLPKLERRTFSVAYRFLKAKSPEQRAEVDLDTHYSQEYLEEYVGTVKRRTILYQQYVKGISNSGMQSNHGFDGQLNACWKHKMTQAEIEAIKSAGFLVSIIHGRDDIIAQLYYARRLAERFHPTARLVDLHGGHLVSHERPEEVNQALFDLIKASEVKMTPHDWTNLPNTQSWWNEKRTSLVKTNQNGSNVSMKSYLTEKLHLCILYFLSLLIMIFEFGRRLVWSFKPARIGTSTTYIESQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00896 411 SUPERFAMILY alpha/beta-Hydrolases 29 320 IPR029058 -
Trre1g00896 411 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN 18 323 - -
Trre1g00896 411 Pfam alpha/beta hydrolase fold 89 309 IPR000073 -
Trre1g00896 411 Gene3D alpha/beta hydrolase 13 323 IPR029058 -
Trre1g00896 411 PRINTS Epoxide hydrolase signature 89 104 IPR000639 GO:0003824
Trre1g00896 411 PRINTS Epoxide hydrolase signature 135 148 IPR000639 GO:0003824
Trre1g00896 411 PRINTS Epoxide hydrolase signature 299 321 IPR000639 GO:0003824
Trre1g00896 411 PRINTS Epoxide hydrolase signature 149 162 IPR000639 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00896 Trre-Chr1 6834500 6840102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00896 89 322 Acyl Lipid Metabolism Gene Families AT3G51000 23.308 1.92e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00896 - - gmx:100785963 640.958