Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1278 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1282 . . . Aed5g0888 . . . . . . . . Arst3g01922 . . . Car06g01998 . . . . . . Gma06g02596 . Gso6g2373 . . . . . . . . . . . . Lja3g1237 . . . . . . . . Psa7g3848 . . . . . . . . . . . . Vimu5g01364 . Vivi5g03339 .
Pvu11g1283 . . . Aed5g0887 . . . . . . . . Arst3g01920 . . . . . . Dod03g2075 . . . . . . Lal1g0453 . . . . Lan13g0459 . . . . . . Lja3g1236 . . . . . . Phco9g01432 . . . . . . . . . . . . . . . . Vivi5g03338 .
Pvu11g1284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1285 . . . Aed5g0885 . . Ahy13g1601 . . . . . Arst3g01917 . . . . Cca04g01158 . . . . Gma12g01056 . Gso12g0968 . . . . . . . . . . . . . Lja3g1235 . Mepo2g02746 . . Mtr4g2483 . . . . . . . Seca4g04903 . . . . Trre7g02267 . . . . . . .
Pvu11g1286 . . . Aed5g0884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1287 . . . Aed5g0883 . . . . . . . . Arst3g01908 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1234 . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03333 .
   
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Select Species Gene Chromosome Start End Strand
Seca Seca4g04903 Chr4 91061199 91063950 +
Pvu Pvu11g1278 Chr11 26141003 26141239 +
Pvu Pvu11g1279 Chr11 26142710 26143508 +
Pvu Pvu11g1280 Chr11 26143818 26143896 +
Pvu Pvu11g1281 Chr11 26144131 26144497 +
Pvu Pvu11g1282 Chr11 26377070 26382146 +
Aed Aed5g0888 Chr5 6736741 6741697 -
Arst Arst3g01922 Chr3 22485562 22491750 -
Car Car06g01998 Chr06 19957621 19964589 +
Gma Gma06g02596 Chr06 49250940 49256208 +
Gso Gso6g2373 Chr6 45301299 45306567 +
Lja Lja3g1237 Chr3 12982419 12986485 -
Psa Psa7g3848 Chr7 320638803 320641730 +
Vimu Vimu5g01364 Chr5 24332068 24337526 +
Vivi Vivi5g03339 Chr5 124459813 124462169 -
Pvu Pvu11g1283 Chr11 26575631 26583646 +
Aed Aed5g0887 Chr5 6726210 6733631 -
Arst Arst3g01920 Chr3 22387545 22394431 -
Dod Dod03g2075 Chr03 48929685 48937875 +
Lal Lal1g0453 Chr1 2842072 2851002 +
Lan Lan13g0459 Chr13 3383415 3392865 +
Lja Lja3g1236 Chr3 12972011 12981335 -
Phco Phco9g01432 Chr9 32087315 32095106 -
Vivi Vivi5g03338 Chr5 124420175 124427663 -
Pvu Pvu11g1284 Chr11 26603842 26604189 -
Pvu Pvu11g1285 Chr11 26605926 26608941 +
Aed Aed5g0885 Chr5 6715142 6715550 -
Ahy Ahy13g1601 Chr13 23253488 23256702 -
Arst Arst3g01917 Chr3 22367808 22369594 -
Cca Cca04g01158 Chr04 13275766 13278910 -
Gma Gma12g01056 Chr12 12048049 12050905 -
Gso Gso12g0968 Chr12 11776946 11779738 -
Lja Lja3g1235 Chr3 12968974 12970932 -
Mepo Mepo2g02746 Chr2 37226659 37229201 -
Mtr Mtr4g2483 Chr4 38395150 38397410 -
Seca Seca4g04903 Chr4 91061199 91063950 +
Trre Trre7g02267 Chr7 18125612 18127429 +
Pvu Pvu11g1286 Chr11 26610934 26614307 -
Aed Aed5g0884 Chr5 6704311 6707563 +
Pvu Pvu11g1287 Chr11 26673494 26677618 -
Aed Aed5g0883 Chr5 6700291 6701488 +
Arst Arst3g01908 Chr3 22348611 22354388 +
Lja Lja3g1234 Chr3 12956595 12959672 +
Vivi Vivi5g03333 Chr5 124392777 124394936 +