Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0887 ATGGCGCCCGATCCTAACCGTGCCGGCACTAGCGCCAGCGCCAACGCCCCCAAAGACAACGCCGTTACGAAGAAGAAGGTCGAGAACGAAGATCTGTCCGATGAGGATTTGGCGTTAAAGCAGCAGCTGGAGTTGTACGTGGAGAGGGTTCAGGATCCCGACCAGGGATTGCAGAAGAATGCACTCGAGAGCATGAGGAAAGCCTCAAGTATAGATTATTGGGTTCAGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGAATCTGGCTGGTGAAATTGCACAAGAATATGCAAAACGACAGAGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATAGTTGCTTTTCACATGAAGCATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAGGTTGAAGACCTTGATATGTTGAGTGGACATGTTGACAAAACAAATTTCAAAAGGACTTGCTTATATCTCACTAGTTCGGCAAGGGACGTGTTCACCTCTTGTAATGATGTGCTGCGAAAGAAGCAATTCTGTTACATGCTTGCACGTCATGGTATTACTTTTGAGCTTGATGAGGAGATGGCTGCAGATGATGAGGACAGAGAAATGTTGCAGGATATCATAAACAATTCTAAGTTAAGTGAAGGATATCTCACCCTTGCTCGTGATATTGAAGTCATGGAGCCCAAGTCCCCTGAGGATATATACAAGGCACATTTGCTTGATGGCCGGGCTAGTGCTGGTGCAAGTGTTGATTCAGCCAGACAAAACCTTGCTGCAACTTTTGTTAACGCATTTGTAAATGCTGGCTTTGGTCAGGATAAATTAATGACTGTTCCATCAGATTCTTCAACCAGTGCTTCTTCTGGGAATTGGCTTTTCAAAAATAAGGAACATGGCAAGACTAGTGCTGCAGCTAGTCTGGGTATGATTTTACTGTGGGACGTTGACTCGGGACTTGCTCAACTTGACAAGTACTTCCATAGTAATGATAATCATGTTATTGCTGGTGCATTATTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTTCTAGGTGACTATACAGATAAAGAAGACACTTCAATCAGGATTGGTGCTATAATGGGTTTGGGAATTGCCTATGCTGGTTCCCAGAATGAACAGTTACGTGAGAAATTGACAGGTGTACTGAATGATTCTAAAGCTTCACTTGATGTGCTTGCTTTCACTGCTATTTCTTTGGGCTTGATCTTTGTGGGTTCTTGCAATGAGGACATTGCTCAAGCAATTATATATACACTAATGGACCGGAGTGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTTGGTCTTGGTCTTCTATATCTTGGAAAGCAGGACAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTCAATGAAAAAATTAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAGGTTCAAAATCTCTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTCACCAAGGCCCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAGAATTGGGACTTGAGATGGCAATTAGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGGTCAATGTTATGGATACCTTGAGCAGACTTAGCCATGATACTGATTCAGAAGTAGCTATGGCAGCAGTTATCTCCTTGGGTCTAATAGGTGCTGGAACAAACAATGCCCGAATTGCCGGCATGCTTCGCAATCTGTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTTAATCCATATCACTCTGATCGCTTCCAACTATCACCGACAGCACTTGCTGGACTAATTACCATGTTGCACGCATGCCTTGACATGAAAGCTATTGTGTTGGGGAAATACCATTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTATCAGTGCCTGTTCGTGTCGGTCAAGCAGTAGATGTTGTCGGACAGGCAGGTCGTCCCAAAACAATCACGGGCTTTCAGACCCACTCCACCCCTGTTCTCCTCGCTGCTGGGGACAGGGCAGAGCTGGCAACGGAAAAATACCTTCCCCTATCGCCAATTCTCGAAGGTTTTGTAATTTTGAAGGAGAATCCAGATTACAGGGAAGAGTGA 2349 0.4432 MAPDPNRAGTSASANAPKDNAVTKKKVENEDLSDEDLALKQQLELYVERVQDPDQGLQKNALESMRKASSIDYWVQRVTLVPGATSMNLAGEIAQEYAKRQSEEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDMLSGHVDKTNFKRTCLYLTSSARDVFTSCNDVLRKKQFCYMLARHGITFELDEEMAADDEDREMLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSSTSASSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYTDKEDTSIRIGAIMGLGIAYAGSQNEQLREKLTGVLNDSKASLDVLAFTAISLGLIFVGSCNEDIAQAIIYTLMDRSESELGEPLTRLLPLGLGLLYLGKQDSVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGETHQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFQLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKENPDYREE 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0887 782 Pfam RPN1 N-terminal domain 163 242 IPR040892 -
Aed5g0887 782 Pfam RPN1 N-terminal domain 88 162 IPR040892 -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 87 164 - -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 68 - -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 163 781 - -
Aed5g0887 782 Gene3D - 245 688 IPR011989 -
Aed5g0887 782 PIRSF 26S_protsm_Rpn1 517 782 IPR016643 GO:0000502|GO:0030234|GO:0042176
Aed5g0887 782 PIRSF 26S_protsm_Rpn1 3 83 IPR016643 GO:0000502|GO:0030234|GO:0042176
Aed5g0887 782 PIRSF 26S_protsm_Rpn1 162 523 IPR016643 GO:0000502|GO:0030234|GO:0042176
Aed5g0887 782 PIRSF 26S_protsm_Rpn1 86 165 IPR016643 GO:0000502|GO:0030234|GO:0042176
Aed5g0887 782 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 726 779 IPR041433 -
Aed5g0887 782 MobiDBLite consensus disorder prediction 1 33 - -
Aed5g0887 782 Pfam Proteasome/cyclosome repeat 376 406 IPR002015 -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 87 164 - -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 13 68 - -
Aed5g0887 782 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 163 781 - -
Aed5g0887 782 SUPERFAMILY ARM repeat 40 648 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0887 Aed-Chr5 6726210 6733631 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0887 K03028 - gmx:100777078 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0887 5 6726210 6733631 Aed5g0887 5 6726210 6733631 ECH