Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1288 . . . Aed5g0882 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1233 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1291 . . . Aed5g0881 . . . . . . . . Arst3g01905 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1230 . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03331 .
Pvu11g1292 . . . Aed5g0880 . . . . . . . . Arst3g01899 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1228 . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03329 Vra2g1197
Pvu11g1293 . . . Aed5g0879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1227 . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03327 .
Pvu11g1294 . . . Aed5g0878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1226 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1295 . . . Aed5g0877 . . . . . . . . Arst3g01885 . . . . . . . . . . . . . . . . . . . Lapu11g00385 . . . . . Lja3g0933 . . . . . . Phco9g01448 . . . . . . . . . . . . . . . . Vivi5g03326 .
Pvu11g1296 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g4337 . . . . . . . .
Pvu11g1297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vivi Vivi5g03329 Chr5 124335030 124335979 -
Lapu Lapu11g00385 Chr11 6942356 6948491 -
Lja Lja3g0933 Chr3 9489877 9495329 +
Pvu Pvu11g1288 Chr11 26677953 26679744 +
Aed Aed5g0882 Chr5 6695918 6700027 -
Lja Lja3g1233 Chr3 12954409 12955827 -
Pvu Pvu11g1289 Chr11 26679839 26680313 +
Pvu Pvu11g1290 Chr11 26711063 26713033 +
Pvu Pvu11g1291 Chr11 26717785 26720968 -
Aed Aed5g0881 Chr5 6692649 6695758 +
Arst Arst3g01905 Chr3 22343189 22345971 +
Lja Lja3g1230 Chr3 12928140 12931454 +
Vivi Vivi5g03331 Chr5 124388616 124390764 +
Pvu Pvu11g1292 Chr11 26734318 26735830 +
Aed Aed5g0880 Chr5 6688100 6688711 -
Arst Arst3g01899 Chr3 22259511 22260700 -
Lja Lja3g1228 Chr3 12919513 12920795 -
Vivi Vivi5g03329 Chr5 124335030 124335979 -
Vra Vra2g1197 Chr2 16215113 16216006 +
Pvu Pvu11g1293 Chr11 26760193 26761922 -
Aed Aed5g0879 Chr5 6671868 6672935 +
Lja Lja3g1227 Chr3 12891689 12893199 +
Vivi Vivi5g03327 Chr5 124283766 124285011 +
Pvu Pvu11g1294 Chr11 26795874 26798494 -
Aed Aed5g0878 Chr5 6665364 6668439 +
Lja Lja3g1226 Chr3 12883829 12888213 +
Pvu Pvu11g1295 Chr11 26843658 26848488 +
Aed Aed5g0877 Chr5 6652472 6657996 -
Arst Arst3g01885 Chr3 22126055 22130650 +
Lapu Lapu11g00385 Chr11 6942356 6948491 -
Lja Lja3g0933 Chr3 9489877 9495329 +
Phco Phco9g01448 Chr9 33527887 33532367 +
Vivi Vivi5g03326 Chr5 124182735 124189533 -
Pvu Pvu11g1296 Chr11 26860851 26861205 +
Tpr Tpr7g4337 Chr7 52103097 52108694 -
Pvu Pvu11g1297 Chr11 26861458 26861707 +