Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1268 Acco08g0779 Accr13g00766 . Aed5g0898 . . . . Alju10g0781 . . . . . Bisa02g3208 . . . . . . Glsi04g0841 . . . . . . . . . . . . Lele29g0595 Lele30g0813 Lele31g0946 Lele32g0576 Lja3g1265 . . . Mibi07g0757 . . Phco9g01419 . . . . . . . . Sto12g0687 Tpr7g4292 . . . . . . Vivi5g03357 .
Pvu11g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1271 . . . Aed5g0896 Aev04g2417 . . . . . . . Arst3g01930 . Bisa02g3206 . . . . . . . . . . . . Lal2g0526 . . . . . . . . . . Lja3g1266 . . . . . . . . . . . . . . . Sto12g0690 . . . . . . . Vivi5g03355 .
Pvu11g1272 . . . Aed5g0895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1273 . . . Aed5g0894 . . . . . . . . Arst3g01929 . . . . . . . . . . . . . . . . . Lan8g1468 . . . . . . . Lja3g1268 . . . . . . . . . . . . . . . . . . Tsu02g01986 . . . . Vivi5g03353 .
Pvu11g1274 . . . Aed5g0892 . . . . . . . . . . . . . . . Dod03g2082 . . . . . . . . . . . . . . . . . . Lja3g1269 . . . . . . . . . . . . . . . . . . Tsu02g01985 . . . . . .
Pvu11g1275 . . . Aed5g0890 Aev04g2651 . . . . . . . Arst3g01926 . . . . . . . . . . . . . . . . . . . . Lasa7g02588 . . . . Lja3g1270 . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03346 .
Pvu11g1276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1277 . . . Aed5g0889 . . . . . . . . Arst3g01925 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi5g03345 .
   
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Select Species Gene Chromosome Start End Strand
Tsu Tsu02g01985 Chr02 19192879 19197239 +
Lja Lja3g1265 Chr3 13296725 13297711 +
Tpr Tpr7g4292 Chr7 51767861 51768563 -
Vivi Vivi5g03357 Chr5 124737247 124738000 -
Vivi Vivi5g03353 Chr5 124602754 124605223 +
Vivi Vivi5g03346 Chr5 124506627 124508502 +
Pvu Pvu11g1268 Chr11 23555784 23556519 +
Acco Acco08g0779 Chr08 6934608 6935048 -
Accr Accr13g00766 Chr13 8551262 8551702 -
Aed Aed5g0898 Chr5 6838720 6838986 -
Alju Alju10g0781 Chr10 6692568 6693014 -
Bisa Bisa02g3208 Chr02 81089704 81090189 -
Glsi Glsi04g0841 Chr04 6030031 6030501 -
Lele Lele29g0595 Chr29 3651673 3652316 -
Lele Lele30g0813 Chr30 12314654 12315680 +
Lele Lele31g0946 Chr31 16755021 16755962 +
Lele Lele32g0576 Chr32 3582842 3583532 -
Lja Lja3g1265 Chr3 13296725 13297711 +
Mibi Mibi07g0757 Chr07 9301542 9302000 -
Phco Phco9g01419 Chr9 31750164 31750580 +
Sto Sto12g0687 Chr12 4376215 4376673 +
Tpr Tpr7g4292 Chr7 51767861 51768563 -
Vivi Vivi5g03357 Chr5 124737247 124738000 -
Pvu Pvu11g1269 Chr11 24033061 24033495 -
Pvu Pvu11g1270 Chr11 24599898 24600299 -
Pvu Pvu11g1271 Chr11 25324661 25327977 +
Aed Aed5g0896 Chr5 6816638 6819360 -
Aev Aev04g2417 Chr04 23623101 23624447 -
Arst Arst3g01930 Chr3 22645969 22648993 -
Bisa Bisa02g3206 Chr02 81062283 81064851 -
Lal Lal2g0526 Chr2 3167885 3171670 +
Lja Lja3g1266 Chr3 13313528 13316845 +
Sto Sto12g0690 Chr12 4391191 4392878 +
Vivi Vivi5g03355 Chr5 124718961 124722290 +
Pvu Pvu11g1272 Chr11 25657056 25660298 +
Aed Aed5g0895 Chr5 6809187 6811122 -
Pvu Pvu11g1273 Chr11 25661581 25664190 -
Aed Aed5g0894 Chr5 6805238 6808846 +
Arst Arst3g01929 Chr3 22625035 22629492 +
Lan Lan8g1468 Chr8 21814485 21816851 -
Lja Lja3g1268 Chr3 13323471 13326272 -
Tsu Tsu02g01986 Chr02 19232016 19236388 +
Vivi Vivi5g03353 Chr5 124602754 124605223 +
Pvu Pvu11g1274 Chr11 25757877 25761611 -
Aed Aed5g0892 Chr5 6797522 6800701 +
Dod Dod03g2082 Chr03 49110230 49114149 +
Lja Lja3g1269 Chr3 13330760 13334351 -
Tsu Tsu02g01985 Chr02 19192879 19197239 +
Pvu Pvu11g1275 Chr11 25987727 25990999 -
Aed Aed5g0890 Chr5 6764689 6767366 +
Aev Aev04g2651 Chr04 26265969 26267893 -
Arst Arst3g01926 Chr3 22595617 22597744 +
Lasa Lasa7g02588 Chr7 534067335 534068765 +
Lja Lja3g1270 Chr3 13341121 13344798 -
Vivi Vivi5g03346 Chr5 124506627 124508502 +
Pvu Pvu11g1276 Chr11 26121036 26123290 +
Pvu Pvu11g1277 Chr11 26130681 26131858 -
Aed Aed5g0889 Chr5 6759233 6759710 +
Arst Arst3g01925 Chr3 22566827 22567403 +
Vivi Vivi5g03345 Chr5 124500482 124501439 +
Lal Lal2g0526 Chr2 3167885 3171670 +