Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03338 ATGGCTCCCGATGCTAACCGTGCCGGTACCGGCGCCAGCACCAGTGGAACTGCCAAAGACGAAGCAGCGGCTAAGAAGAAGATCGAGAGTGAAGATCTGTCAGATGAGGATTTGGCTTTGAAGCAACAACTCGAGTTGTATGTTGAGAGGGTTCAGGATTCCGAGCCTGGTTTACAGAAGGTTGCTCTTGAGAGCATGAGACAAGAAATTCGTACTTCCACTAGCTCCATGACCTCAGTTCCCAAGCCACTGAAGTTTTTGCGTCCCCATTATGGCACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTGAAGAAGTACTTGGCAGACATATTATCAGTTTTGGCCCTTACAATGTCTGCAGAAGGAGAAAGAGAAAGTCTCAAATACAGATTGCTAGGTTCAGAGGGCGATATTGGTTCATGGGGACACGAATATGTTAGGAATTTGGCTGGAGAAATTGCCCAGGAATATGCAAAACGACAGAGTGAAGAGGCCCCAATTGATGATCTCATGGAACTTGTACAGCAGATAGTTGCTTTTCACATGAAGCATAATGCTGAACCAGAAGCTGTTGATCTTTTGATGGAGGTTGAAGACCTAGATATGTTGATCGAGCATGTTGACAAAACAAATTTTAGAAGGACTTGCCTGTATCTCACAAGTTCAGCTAGGTATCTTCCTGGACCAGATGATATGCTAGTTTTAGACATTGCATATTTAATCTATCTAAAATTTGAAGAATATCCAAATGCACTCCAAATCGCATTGTTCCTGGATAACCTGCAGTATGTGAGGCAGGTGTTCACCTCTTGTGAGGATGTTCTGCGAAAGAAGCAATTTTGTTACATACTTGCACGCCATGGAATCACTTTTGAGCTTGATGAGGAAATGGTTAATGATGACGAAGACCGAGAAGTATTGCAAGATATCATAAACAATTCTAAGCTAAGTGAAGGATATCTAACTCTTGCTCGTGATATTGAAGTCATGGAGCCCAAGTCCCCTGAAGATATATACAAGGCACATTTGCTTGATGGACGTGCAAGTGCTGGTGCGAGTGTTGACTCAGCCAGACAGAACCTTGCTGCTACTTTTGTTAATGCATTTGTTAATGCTGGGTTTGGTCAGGATAAGTTAATGACTGTTGCATCCGATTCTTCAAGTAGTGGTTCTTCTGGAAATTGGCTTTTCAAAAACAAGGAACACGGGAAGACTAGTGCTGCAGCAAGTCTGGGTATGATTTTACTCTGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAACCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGACCCTGCAATGGCACTCCTTGGTGATTATATAGATAAAGAAGATAGTTCAACCAGAATTGGTGCAATTATGGGATTAGGAATTGCATATGCAGGTTCCCAGAATGAGCAGTTACGATACAAGTTGGCACCTATTCTGAGTGATCCTAAAGCTTCACTTGATGTGATTGCTTTCACGGCAATTGCATTGGGCTTGATCTACGTGGGTTCTTGCAATGAGGAAGTTGCTCAAGCAATAATATTTACGTTGATGGACCGGAGTGAATCAGAGTTGGGAGAGCCCCTTACACGACTACTACCACTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAGCGTGGAGGCAACAGCTGAAGTTTCAAAGACTTTTAATGAAAAAATTAGAAAGTATTGTGACATGACACTACTGTCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCACAACATCTTGACAAAGGTGAAATGCACCAAGGTCCTGCAGTTCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCTATTCGATCGTTAGAACATCTTCTACAGTATGGAGAGCAGAATATTCGCCGAGCAGTTCCTCTGGCACTTGGTCTGCTCTGCATATCAAACCCAAAGGTCAATGTTATGGATACCTTGAGCAGACTTAGCCATGATACTGATTCAGAAGTAGCAATGGCAGCTGTTATCTCCTTGGGTCTAATAGGCGCTGGAACAAACAATGCTCGGATTGCTGGCATGCTACGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGAATTGCCCAAGGTCTTGTACATTTGGGAAAGGGACTCCTTACACTTAATCCTTATCATTCTGACCGGGCCTTATTGTCACCGACAGCACTTGCCGGCCTAATTACTATGTTACATGCTTGCCTCGATATGAAAGCTATTGTGTTGGGAAAATATCACTACGTTCTCTACTTCCTCGTTTTGGCAATGCAGCCAAGGATGTTGTTGACTGTGGATGAGAACTTAAAGCCTCTATCAGTACCTGTCCGAGTTGGTCAAGCTGTGGACGTTGTTGGACAGGCAGGTCGTCCTAAGACGATCACTGGATTTCAGACCCATTCTACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTAGCCACAGAAAAATATATTCCCCTATCACCAATTCTTGAAGGTTTTGTAATATTGAAGGACAATCCAGATTATAGGGAAGAGTGA 2661 0.4329 MAPDANRAGTGASTSGTAKDEAAAKKKIESEDLSDEDLALKQQLELYVERVQDSEPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMAESELKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQSEEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDMLIEHVDKTNFRRTCLYLTSSARYLPGPDDMLVLDIAYLIYLKFEEYPNALQIALFLDNLQYVRQVFTSCEDVLRKKQFCYILARHGITFELDEEMVNDDEDREVLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDSSTRIGAIMGLGIAYAGSQNEQLRYKLAPILSDPKASLDVIAFTAIALGLIYVGSCNEEVAQAIIFTLMDRSESELGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEMHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRALLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKDNPDYREE 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03338 886 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 30 884 - -
Vivi5g03338 886 Pfam RPN1 N-terminal domain 44 346 IPR040892 -
Vivi5g03338 886 Pfam Proteasome/cyclosome repeat 480 510 IPR002015 -
Vivi5g03338 886 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 830 883 IPR041433 -
Vivi5g03338 886 SUPERFAMILY ARM repeat 42 750 IPR016024 -
Vivi5g03338 886 Gene3D - 349 792 IPR011989 -
Vivi5g03338 886 MobiDBLite consensus disorder prediction 1 34 - -
Vivi5g03338 886 MobiDBLite consensus disorder prediction 20 34 - -
Vivi5g03338 886 PIRSF 26S_protsm_Rpn1 2 627 IPR016643 GO:0000502|GO:0030234|GO:0042176
Vivi5g03338 886 PIRSF 26S_protsm_Rpn1 621 886 IPR016643 GO:0000502|GO:0030234|GO:0042176
Vivi5g03338 886 FunFam 26S proteasome non-ATPase regulatory subunit 2 homolog 349 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03338 Vivi-Chr5 124420175 124427663 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03338 K03028 - gmx:100777078 1582