Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1236 ATGGCGCCCGACCCCAATCGCGCCGGCGCCAGCTCCAGCGCCGCCCCCAAAGACGACGCCGTCGCCAAGAAGAAGGTCGAGACCGAAGATCTGTCGGATGAGGATTTAGCGTTAAAGCAGCAACTGGAGTTGTATGTTGAGAGGGTTCAGGATCCCGACGCTGGGTTGCAAAAGGTTGCCCTAGAGAGCATGAGGCAAGAAATTCGAACTTCAACTAGCTCCATGACTTCAGTTCCGAAGCCGTTGAAGTTTCTGCGACCCCATTATGGTACTCTTAAGGCATATTATGAAATTATGCCGAAATCTGATTTGAAGAAGTACTTGGCTGATATATTATCAGTTTTGGCCCTTACCATGTCTGCTGAGGGCGAACGAGAAAGCCTCAAGTACAGATTATTGGGTTCAGAGGGTGATATTGGTTCTTGGGGCCATGAGTATGTTAGGAATCTGGCTGGAGAGATTGCACAAGAGTATGCAAAAAGACAGACTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTACAACAAATAGTTGCTTTTCACATGAAGCACAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAGGTTGAAGACCTTGATTTGTTGGTTGAACATGTTGATAAAACAAATTTTAGAAGGACTTGTCTGTATCTCGCCAGTTCAGCTAGATACCTTCCTGGACCAGATGATATGTTAGTTTCAGACATTGCATATTCGATTTATCTAAAATTTGAAGAATATCCGAACGCAATCCAAATTGCATTGTTTCTGGATAACATGCAGTATGTGAAGCAGGTGTTCACCTCCTGTGATGATGTGCTGCGAAAGAAGCAGTTTTGTTACATCCTTGCACGTCATGGAATTACTTTTGAGCTTGATGATACAATGGTTGCTGATGATGAGGACAGAGAAATGTTGCAGGAAATCATAAACAATTCTAAGTTAAGTGAAGGATATCTGACTCTTGCTCGTGATATTGAAGTCATGGAACCCAAGTCTCCTGAGGATATATACAAGGCACACTTGCTTGATGGTCGTGCTAGTGCTGGTGCCAGTGTTGATTCAGCTAGACAGAACCTTGCTGCTACTTTGGTTAATGCATTTGTGAATGCTGGTTTTGGCCAGGATAAGTTAATGACTGTTGCATCAGATTCTTCAAGTAGTGGTTCTTCTGGAAATTGGCTTTTCAAGAACAAGGAACATGGGAAGACTAGTGCTGCAGCAAGTTTGGGTATGATTTTACTATGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTATTGGGAGTTGGAATTGTCAATTGCAGTATCAAGAATGACTGTGATCCTGCAATGGCTCTCTTAGGTGACTATACAGATAAAGAGGATGCTTCAATCAGGATTGGTGCAATTATGGGATTGGGAATTGCATATGCCGGTTCACAGAATGAGCAGTTACGTTGCAAATTGGCACCTATACTAAATGATACGAAAGCTTCACTTGATGTGATTGCTTTCACGGCAATTTCATTGGGCTTGATCTATGTGGGTTCTTGCAATGAAGAAGTTGCTCAAGCAATCATATTTGCACTGATGGATCGTAGTGAGTCGGAGTTGGGAGAGCCCCTCACACGACTCTTACCTCTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAATGTGGAGGCAACAGCTGAAGTTTCAAAGACTTTTAATGAAAAAATTAGGAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTTCAAAATCTATTGGGTCATTGTTCACAACATCTCGATAAAGGTGAAGCACACCAGGGACCTGCAGTGCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCAATTCGATCATTGGAACATCTTCTACAATATGGAGAGCAAAATATTCGCCGGGCTGTTCCTCTGGCACTTGGTCTACTGTGTATATCAAATCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGACACTGATTCAGAAGTTGCAATGGCTGCAGTTATCTCCTTGGGTCTAATCGGTGCTGGAACAAACAATGCTCGAATCGCTGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGTTTATTAACGCTTAATCCATACCATTCTGATCGCTTCTTACTATCACCGACAGCACTTGCTGGACTAATTACCATGTTGCATGCATGCCTTGACATGAAAGCTATCGTGTTGGGAAAATATCACTATGTCCTCTACTTCCTCGTTTTGGCAATGCAGCCGAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCTGTTCGGGTTGGTCAAGCAGTCGATGTTGTCGGACAAGCAGGTCGTCCTAAGACAATTACTGGCTTTCAGACCCACTCAACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTGGCAACAGAAAAATACATTCCCCTGTCACCCATTCTAGAAGGTTTTGTAATTTTGAAGGAGAATCCAGATTATAGGGAAGAGTGA 2655 0.4365 MAPDPNRAGASSSAAPKDDAVAKKKVETEDLSDEDLALKQQLELYVERVQDPDAGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYEIMPKSDLKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTEEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDKTNFRRTCLYLASSARYLPGPDDMLVSDIAYSIYLKFEEYPNAIQIALFLDNMQYVKQVFTSCDDVLRKKQFCYILARHGITFELDDTMVADDEDREMLQEIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATLVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYTDKEDASIRIGAIMGLGIAYAGSQNEQLRCKLAPILNDTKASLDVIAFTAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLLPLGLGLLYLGKQENVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEAHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREE* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1236 884 PIRSF 26S_protsm_Rpn1 619 884 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lja3g1236 884 PIRSF 26S_protsm_Rpn1 3 625 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lja3g1236 884 Pfam RPN1 N-terminal domain 42 344 IPR040892 -
Lja3g1236 884 Gene3D - 347 790 IPR011989 -
Lja3g1236 884 SUPERFAMILY ARM repeat 39 748 IPR016024 -
Lja3g1236 884 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 828 881 IPR041433 -
Lja3g1236 884 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g1236 884 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 12 883 - -
Lja3g1236 884 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 883 - -
Lja3g1236 884 MobiDBLite consensus disorder prediction 18 32 - -
Lja3g1236 884 Pfam Proteasome/cyclosome repeat 478 509 IPR002015 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1236 K03028 - gmx:100777078 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1236 3 12972011 12981335 Lja3g1236 3 12972011 12981335 ECH