Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00852 ATGGCTGGAGCTGAAGCTACAAAATATGCTTCTCCTACAAGTCCTACAACCACTGCTACCACCAACATGGCCACCAGATCAAACAAGCCAGCAACCATGATCAGAAGATTCATTGGGGTGAGGCAAAGACCCTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCCCAGCACGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCAAGGGCTTATGATGAAGCTGCAAGAGCCCTGAGAGGTGAAAATGCCAGAACCAACTTTGCTCCAATGAACCAAGTCACAGGGCAATCTGGGTCTAACCTTTTAACTGGTGATGGGAAGCATGGTTTGAGCTTCGCTTCCTTGAAAGCCAAGTTGAGCAAGAATCTTCAGAACATCATGGCTAGGGCAAGTGATCACAACAAGTCCTCGAAGAGTCGGGTGAGTGACCACTTCACCTTTGCCAGCATATTCCACCGCAGGAGCTACCAAATTCCTGAAGGAGACATGAGGAACATTGAGAAAGTGGTGCAGCCTAGCATTATTGTACCACCTGTGGAAGGTGGTGTTGATCATGCTTCTGCTGCTAACTGGGAAAGTGCTTCCAGTGTCTCTGATTGCAGCTCTGAGTGGGTCGGGTTCGGGAAAGTCGGGTTGGATCAGTCAGACGGGTCGGATGTTGGTGAGTTTGGTGTTGGTGATCAAGGGTTCTTGGAGCAGCTGATGGGGTGGGTTGAAAGCCCTGATGTTAGTGATCAAAGTGAGTGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTACCTCCAACTTTCACTGCCTCTCCTTATGATTGTGGATCCCCTTATAGCGGTTATGCCTCTCCTTATAGCGGTTATGCCTCTCCTTATAGCGGTTATGCCTCTCCTTATAACGGTTATGCCTCTCCCTATAACGGTTGTGCCTCCCCTTGTAATGGTTGTGCTTCTCCATATTACAATAAGAAGTGA 990 0.4889 MAGAEATKYASPTSPTTTATTNMATRSNKPATMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPMNQVTGQSGSNLLTGDGKHGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPEGDMRNIEKVVQPSIIVPPVEGGVDHASAANWESASSVSDCSSEWVGFGKVGLDQSDGSDVGEFGVGDQGFLEQLMGWVESPDVSDQSECSRSKRFKVSSSVLVPPTFTASPYDCGSPYSGYASPYSGYASPYSGYASPYNGYASPYNGCASPCNGCASPYYNKK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00852 329 SUPERFAMILY DNA-binding domain 37 93 IPR016177 GO:0003677
Phco1g00852 329 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Phco1g00852 329 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Phco1g00852 329 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 189 - -
Phco1g00852 329 MobiDBLite consensus disorder prediction 1 27 - -
Phco1g00852 329 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Phco1g00852 329 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00852 Phco-Chr1 8092532 8093521 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00852 AP2 1.2e-15 CL0081