Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00854 ATGGTGGAAGCTAGTAAAGATGCAGTAGCAGTAGATGCCTGTTCAAGAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAAGGCAAGAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCTTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAAGCTGTGTCAAAGACACTCCAAGAAGCCACGGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCATTAACCGTGTTGGGTTTTATGGCAGAATCAGATATTGCAAGACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACATGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGAAACCTCTCCAAGGATAAGAGAGAAGACAGTTACTGTTATATGCTCTCTTGTGGAATCGGGGAGCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGCCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACATGGTGGTGTTCGGCCATTGATTGAACTTTGTCAAAGTGGCGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATATATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGCGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCAAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTGACTTCAAGCAATGAGCATTTGAGAAAGTCTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCATTGAGGAATCTTGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGGTTCATGTTCTGAAGTCTGGATCTTTGGGTGCCCAACAAGCTGCCACTTGTGTGATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGCTGCATCCCTCTTCTCATAAAGATGCTTGAGGCTAAAGCAAATAGTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTCCAGTTGCTTGATCCAAGCCCTCAGAACAGTGCCAAAAAGTATGCAGTTTCATGCCTTGGATCACTTTCCCCATGTAAGAAGTGTAAGAAACTAATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGAGATTCCAGGAGCTAAAAAGCTACTTGAGAGGTTGGAAAGAGGGAAACTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4373 MVEASKDAVAVDACSREDWLLHAQELVPVALAKAREVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLQEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGFMAESDIARHNNIRELLARLQIGHMEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTETSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAASKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLNCGILLGSKEYAAECLQNLTSSNEHLRKSVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKSGSLGAQQAATCVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKANSAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMEIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00854 560 SMART arm_5 351 389 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 430 470 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 267 307 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 308 349 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 390 429 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 185 225 IPR000225 GO:0005515
Phco1g00854 560 SMART arm_5 471 513 IPR000225 GO:0005515
Phco1g00854 560 SUPERFAMILY ARM repeat 154 539 IPR016024 -
Phco1g00854 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Phco1g00854 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Phco1g00854 560 Pfam Armadillo/beta-catenin-like repeat 432 468 IPR000225 GO:0005515
Phco1g00854 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 558 - -
Phco1g00854 560 Gene3D - 153 550 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00854 Phco-Chr1 8122399 8124081 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02493 3 51669413 51672612 Phco1g00854 1 8122399 8124081 PCT