Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2714 ATGCCAGAGAAATATGATACAGGGAGATTTTTGGCAATACGATTGAAAGACTTTGACATTCATTCTTTAAAGGGGATCAAAATGCTGTTTGAAAGAgttgaaaatttgtttctaGAAGAACTTAACATTGCCCCTAAAGAAGATAATATTGTCCctgatattttttatagattGAATTTAAAAGGATTcccatttcttaaaaatttgttgATTGTGAATAATTCTACCATTCAATCTCTCATCCATCCAGCGGATAGAGTAGGTAGACTACTCCCCGAGAAAGCTTTTCCTAAATTGGAGTCATTGTGTCTCTACAATCTCAAGAAGATGGATAAAATATGCTCATGTGAACTTTCAGAACCCTCCTTTGGTAAACTGAAAGAGATCAAGATCAATCTCTGTGGTCAATTGGAGAGTGTCTTCTCAATTTCTGTCGTTAGACTTTTAACTGTTCTTGAAACAATTGAAGTTTCTGAATGTAACTCTTTGAAGGAGATTGTCCCAGTGGAAACGCAAAGCAACACCAGTGAAATCAAGCTTCTTAAGCTTCCTGAATTACGCTCTTTGAAGCTACAATCTTTATCTGAATTTATTGGATTTTATCCCATTCCATcaagagaaagagaggaaaaagaacTCTTCCACGAAAAGACACTAATCATGTGTGTCTCTTTGCAGGTTGAAGCTTTAAAATTAGAGAGAATGGAGTTGTCCTCAATCCCGATTGACAAAATATGGAGTGACTATTCTTCAAAAAGATcctcttttcaaaatttgacacatttggATGTTAATGgttgttcaaaattaaaatatttaatgtcattttcaATAGCCAACAGTCTGGTAAGTCTTCAAAGCCTTTTTGTAAGTAAATGCGAGATGGAAAGCATCTTTCCCCGAGAACAAGATAGTCACCAGAAGATGAAGGTAAGTGGCATCTTTCCAAAATTGAAGAATATCAAACTTAGTAGCATGAAGAGTTTGAGTGAGATATGGAATTCGAAACTCCCTTCAGATTCCTTTAGCAAACTTGACACGCTAATCATTGAGGAGTGTGATAAATTAGTCAATGTTTTTCCTCGTTACATTGAGGCAATATTTCGGAATCTATGCAATTTGAGAGTTACAAATTGCAGGTCCATGCAagcaatatttaatatacttgAACCAGTTGGGGATGTTGCTAACTTGCAGGATGTTCATTTAGAAATACTCCCAAAATTGGAACATGTATGGAAATTGAATGAAGACCGAGAAGGGATTCTTAACTTGCACAATCTTCAAAAGATACGGGTTCAAAAATGTCACAGCttggaaaatatatttccattttCTGTAGCCACATGTCTTCGTAATCTTGAATACCTTGTGGTGTGGGATTGCTCTGTATTGAGGGAAATTGTTGCTAAAAGGGAAGTTGCCAACGCTGATGCAGCCAATCTTGCTGCGTCATTTAACTTCCCTAAACTAAGAATCATCAAATTTTTTGTACTACAACGACTTACGAGTTTCTATCCAGGagctcataaattattttgtccaACGTTGGATGACCTGTCTATTCGACGTTGTGACAACCTGGAACCATTCAGTAAGGAAACCGTAGATGCACAAAGAAAGCCTGTCCTCTTTCCTGAGGAGgTAATCAATAAATTGAAGTCCATGCAAATTGAGTCTTGGCATGCAGAGTCACCAAACAGTTATATGACAGAAGGGAACCATCGAAGGGATAACTTAGAAAAGCTTTGCTTATCTGGATTAAAGGATACTGAGATTTTATATTCTTTCCTTCATAGAAATCCTAATTTGAAAAGCCTATCACTgaGTAGTTCCAAAGCTGAAAATCTTGAAGTTGATAAACTTACCTAA 1872 0.3333 MPEKYDTGRFLAIRLKDFDIHSLKGIKMLFERVENLFLEELNIAPKEDNIVPDIFYRLNLKGFPFLKNLLIVNNSTIQSLIHPADRVGRLLPEKAFPKLESLCLYNLKKMDKICSCELSEPSFGKLKEIKINLCGQLESVFSISVVRLLTVLETIEVSECNSLKEIVPVETQSNTSEIKLLKLPELRSLKLQSLSEFIGFYPIPSREREEKELFHEKTLIMCVSLQVEALKLERMELSSIPIDKIWSDYSSKRSSFQNLTHLDVNGCSKLKYLMSFSIANSLVSLQSLFVSKCEMESIFPREQDSHQKMKVSGIFPKLKNIKLSSMKSLSEIWNSKLPSDSFSKLDTLIIEECDKLVNVFPRYIEAIFRNLCNLRVTNCRSMQAIFNILEPVGDVANLQDVHLEILPKLEHVWKLNEDREGILNLHNLQKIRVQKCHSLENIFPFSVATCLRNLEYLVVWDCSVLREIVAKREVANADAANLAASFNFPKLRIIKFFVLQRLTSFYPGAHKLFCPTLDDLSIRRCDNLEPFSKETVDAQRKPVLFPEEVINKLKSMQIESWHAESPNSYMTEGNHRRDNLEKLCLSGLKDTEILYSFLHRNPNLKSLSLSSSKAENLEVDKLT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2714 623 Gene3D Ribonuclease Inhibitor 206 339 IPR032675 -
Ssu4g2714 623 Gene3D Ribonuclease Inhibitor 3 205 IPR032675 -
Ssu4g2714 623 Gene3D Ribonuclease Inhibitor 360 541 IPR032675 -
Ssu4g2714 623 SUPERFAMILY RNI-like 414 612 - -
Ssu4g2714 623 PANTHER - 11 301 - -
Ssu4g2714 623 PANTHER - 315 397 - -
Ssu4g2714 623 PANTHER - 425 562 - -
Ssu4g2714 623 PANTHER RPP4C3 11 301 - -
Ssu4g2714 623 PANTHER RPP4C3 315 397 - -
Ssu4g2714 623 PANTHER RPP4C3 425 562 - -
Ssu4g2714 623 SUPERFAMILY RNI-like 31 296 - -
Ssu4g2714 623 SUPERFAMILY RNI-like 231 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2714 Ssu-Chr4 69439472 69442333 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2714 - - pvu:PHAVU_010G091800g 754.592