Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2987 ATGGCGGATCCAGTTCTTCACCCAGACACTACAAACCCTCTTCATCACCATCAAACGCAACCTCTCAAAGAGATCGCCATTGACTACACACCAGAAGCATGCTCTCATTGCCCTAATTCCAACACCATCACCCTCACCTTCGATCACCGCGGCGGCGCCAGGTGGCGCACCACCACTCGCTTCCACTATGGCACCTTCAGCTCCCTCATCCAGTGCCCTAAGGGTAACACCAATGGCCTCAACTTCAACCTCTACCTCTCTTCCTTAGAAGGTGAAAAGTCCCAAGATGAGATAGATTTTGAGTTCTTGGGTAAGGATAGGACCATTGTGCAGACAAACTACTTCAGTGGTGGCAATGGCAACAAGGAGAAGATTCACCATCTGGGTTTTGATGCCTCTGATGGTTTTCATGAGTATGTGATCAAGTGGAGTTGTGACGTGATAGAGTGGCTCATTGATGGGAAGGTAGTCAGAAGAGAGGAGAAGAAAGAAGGTAAAGGGTTCCCTCAGAAGCCTATGTTCTTGTATGCTTCCATTTGGGATGCAAGCTGCATTGCTAATGGGATGTGGGCAGGGAAGTATGATGGGAGTGATGCACCTTATGTTTGTCTCTATAAGGACATTCATGTCCCTACTAGCACTGCAGTTAAATGA 654 0.4801 MADPVLHPDTTNPLHHHQTQPLKEIAIDYTPEACSHCPNSNTITLTFDHRGGARWRTTTRFHYGTFSSLIQCPKGNTNGLNFNLYLSSLEGEKSQDEIDFEFLGKDRTIVQTNYFSGGNGNKEKIHHLGFDASDGFHEYVIKWSCDVIEWLIDGKVVRREEKKEGKGFPQKPMFLYASIWDASCIANGMWAGKYDGSDAPYVCLYKDIHVPTSTAVK* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2987 217 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 211 IPR013320 -
Amo12g2987 217 PANTHER GLYCOSYL HYDROLASES FAMILY 16 PROTEIN, EXPRESSED 11 214 - -
Amo12g2987 217 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 216 IPR000757 GO:0004553|GO:0005975
Amo12g2987 217 Gene3D - 11 217 - -
Amo12g2987 217 PRINTS Glycosyl hydrolase family 16 signature 53 71 IPR008264 GO:0004553|GO:0005975
Amo12g2987 217 PRINTS Glycosyl hydrolase family 16 signature 94 109 IPR008264 GO:0004553|GO:0005975
Amo12g2987 217 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Amo12g2987 217 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Amo12g2987 217 PRINTS Glycosyl hydrolase family 16 signature 148 165 IPR008264 GO:0004553|GO:0005975
Amo12g2987 217 Pfam Glycosyl hydrolases family 16 38 187 IPR000757 GO:0004553|GO:0005975
Amo12g2987 217 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 11 214 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2987 Amo-Chr12 117349300 117350467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2987 50 210 Glycoside Hydrolase AT2G06850 38.690 1.56e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2987 - - jre:108980870 359.377