Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0628 ATGGGAACTACCTCTTCATCATTCTTCCCAAACCCGAGACCCCATCCCTTCTCAAATTCGAAACCCCAATGGATATACGACGTGTTCATCAATTTTAGGGGAGAAGACACCCGTAGGAATTTCGTTTCTCATCTCCATTACGCCCTCTCAAAAGCCGGAGTCAACACTTTCCTTGACGAGGAGAATCTACTAAAGGGAATGCAGTTGGAAGAACTATTGCGTGCAATAGAAGGGTCTCAGATAGCAATAGTTGTTTTCTCCAAAACATATACCGAATCCACTTGGTGTCTTGATGAGCTTGAAAAAATCAGTAAATGCCATGGAACTTGTGGCCAAAAAGTTGTGCCCGTATTTTACGATATTGACCCGTCAGTTGTACGTCATCAGAAGGGTGATTTTGGAAAAGCGTTGAAAGCAGCtgcagaaaaaatatatttaggagAAGATCTGGAACATGCGTTGTCGAGGTTGAGCAGCGCACTCACCAAAGCTGCAAATTTCTCTGGTTGGGATGTGAGGAATTACAGGTAA 531 0.4218 MGTTSSSFFPNPRPHPFSNSKPQWIYDVFINFRGEDTRRNFVSHLHYALSKAGVNTFLDEENLLKGMQLEELLRAIEGSQIAIVVFSKTYTESTWCLDELEKISKCHGTCGQKVVPVFYDIDPSVVRHQKGDFGKALKAAAEKIYLGEDLEHALSRLSSALTKAANFSGWDVRNYR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0628 176 Gene3D - 18 176 IPR035897 -
Ssu2g0628 176 Pfam TIR domain 26 142 IPR000157 GO:0007165
Ssu2g0628 176 ProSiteProfiles TIR domain profile. 24 176 IPR000157 GO:0007165
Ssu2g0628 176 PANTHER TMV RESISTANCE PROTEIN N-LIKE 19 176 - -
Ssu2g0628 176 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 19 176 - -
Ssu2g0628 176 SMART till_3 25 160 IPR000157 GO:0007165
Ssu2g0628 176 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 170 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0628 Ssu-Chr2 35904411 35904941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0628 21 143 Miscellaneous Gene Families AT4G19920 42.276 1.87e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0628 - - gmx:100815297 249.595