Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00956 atggaacccgcgtcatcttcatcctcctttcccatattaaaacaatggatatacgatgtgttcatcaatttctggggagaagagatcgaaagaaattttgtttctcatcttcatagtgcccttctacaagctgaagtcaacacattcctgaatggaatggaacaaggagaaggagagcttgtgcatgcaatagaagggtctcagatagcaatagttgttttcaccaaaagctatgctgaatctacttggtgtcttgaagtccttgcaaaaatcattgaatgccacgaaacttatggcctgaaagttgtgcctgtattttacgaaattgacccttctgtggtccctagtcaagagggtgattttggaaaagtgatggaagcagctgctaaaaagagattttcaggcaaagatctggaatctgcgttgttgaggtggaccctcgcactcaccaaagctgcaaatttggatagggacaagatgaatcacaggtaa 492 0.0 MEPASSSSSFPILKQWIYDVFINFWGEEIERNFVSHLHSALLQAEVNTFLNGMEQGEGELVHAIEGSQIAIVVFTKSYAESTWCLEVLAKIIECHETYGLKVVPVFYEIDPSVVPSQEGDFGKVMEAAAKKRFSGKDLESALLRWTLALTKAANLDRDKMNHR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00956 163 SMART till_3 17 155 IPR000157 GO:0007165
Pste6g00956 163 Pfam TIR domain 18 151 IPR000157 GO:0007165
Pste6g00956 163 PANTHER TMV RESISTANCE PROTEIN N-LIKE 5 157 - -
Pste6g00956 163 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 154 IPR035897 -
Pste6g00956 163 ProSiteProfiles TIR domain profile. 16 163 IPR000157 GO:0007165
Pste6g00956 163 Gene3D - 12 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00956 Pste-Chr6 3804604 3807048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00956 18 149 Miscellaneous Gene Families AT5G45220 41.481 8.20e-25 97.8