Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4751 ATGTTTCGTCCTCGTCGTCCTCCTCCTTCGTTTTCTTCATCATCATCCAGACCCCAATGGATCTACGACGTGTTCATCAATTTCAGAGGAGAAGATACTCGCAGCAGTTTCGTTTCTCATCTCTATGCTGCACTCTCAAACGCTGGAATCAACACTTTTCTTGACGATGAGAATCTTCAAAAGGGAAAGAAACTTGGACCAGAGTTACTGCGAGCAATAGACGGTTCTCAGATATTCATCGTTGTTTTCTCGGAAAACTACGTTCACTCTAGTTGGTGTCTTGATGAACTCCAACAAATCATGAAATTTCACACAGATAAGGATCGAGTTATTATGCCTGTATTTTACGGTATTACCCCTTCGTATCTACGCAAATATGCTAAGCAAACTTTTGGAGAAGCTCTCACTAGAAGTAGCGACAGAAATAAGTTTGATATTAGTGATTACAGTGATGATGTGAAGGAAAATCTACAAAAGAAAGCACTCATCGGTGCTTCGAATTTGTCTGGCTGGGACATGAGTAATTACAGTAATGAAAGCAATGTTGTGAAGACAATTGTTGGCGAAGGAACAAAAGCCATTGAAGGATTGGTTATGAAGTTGCAAGGGACCAGTCTTACTGAATTCAGAACATCACCTGCATCACAAATTAACGATCTTTCCTTAAGATCTCTTTTGATTAGAATTGGAAGTTGCCACATTGTCATGGATACTCTTGAGAAGAGCTTATCACAGAGATTGGCAACCAATTGTAGTGATTCATTCCTTCCGGGTGACAATTATCCTTCTTGGTTGGCCTATAGAGGTGAAGGACCTTCAGTACACTTTCAAGTTCCCGAGGATGCTGATTGTGGGATGAAGGGAATAACTCTATGCGTTCTTTATTCGTCAACACCAGAAAACCTGGCAACTGAATGTTTCACTAGTGTCTTGATTATTAATTACACAAAATTCACTATCCATATTTACAAAGGAGACACAGTAATCTCATTTAATGATGAAGATTGGCAAAGTGTGGTATCAAATTTAGGAGCTGGTGACAATGTGGAGATTTTTGTAGCTATTGGACAAGGATGGATTGTTAGAGAGACTGCTGTCTATCTAATATATGACCAGTCAAATGGTATGGAAACTGAGTCATCTAGTGAAGCAAAAATTGAGCCGTTACATGAAGTGGAAGTGCAACCATTATCTAATGGGAAGAGAGAGCCATCATCACCTGATGTGAAGACAGAGCCATCATCACCTGATGTGAAGACAGAGCCATCATCACCTGATGTGAAGACAGAACCATCAGCTGAAGAGGAAGTACAGCCACCACCTGATGTGAAAATGGAACCATCGCGTGTGGTAAACGATGAACTGTTACCGAAGAAAAATAGAAAGTATTTTACAAGACTTATAAAGAGAGTGGGAAATTTTTTATTATGCTTGAATCAGAATTGA 1446 0.3976 MFRPRRPPPSFSSSSSRPQWIYDVFINFRGEDTRSSFVSHLYAALSNAGINTFLDDENLQKGKKLGPELLRAIDGSQIFIVVFSENYVHSSWCLDELQQIMKFHTDKDRVIMPVFYGITPSYLRKYAKQTFGEALTRSSDRNKFDISDYSDDVKENLQKKALIGASNLSGWDMSNYSNESNVVKTIVGEGTKAIEGLVMKLQGTSLTEFRTSPASQINDLSLRSLLIRIGSCHIVMDTLEKSLSQRLATNCSDSFLPGDNYPSWLAYRGEGPSVHFQVPEDADCGMKGITLCVLYSSTPENLATECFTSVLIINYTKFTIHIYKGDTVISFNDEDWQSVVSNLGAGDNVEIFVAIGQGWIVRETAVYLIYDQSNGMETESSSEAKIEPLHEVEVQPLSNGKREPSSPDVKTEPSSPDVKTEPSSPDVKTEPSAEEEVQPPPDVKMEPSRVVNDELLPKKNRKYFTRLIKRVGNFLLCLNQN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4751 481 ProSiteProfiles TIR domain profile. 20 161 IPR000157 GO:0007165
Psa4g4751 481 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 25 141 - -
Psa4g4751 481 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 193 370 - -
Psa4g4751 481 MobiDBLite consensus disorder prediction 428 455 - -
Psa4g4751 481 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 127 IPR035897 -
Psa4g4751 481 Gene3D - 16 198 IPR035897 -
Psa4g4751 481 Pfam TIR domain 22 186 IPR000157 GO:0007165
Psa4g4751 481 SMART till_3 21 154 IPR000157 GO:0007165
Psa4g4751 481 MobiDBLite consensus disorder prediction 399 427 - -
Psa4g4751 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 193 370 IPR044974 GO:0006952
Psa4g4751 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 141 IPR044974 GO:0006952
Psa4g4751 481 MobiDBLite consensus disorder prediction 379 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4751 Psa-Chr4 418089641 418094979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4751 18 236 Miscellaneous Gene Families AT5G44900 29.224 4.37e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4751 - - mtr:MTR_8g011710 352.443