Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01430 ATGCCTTCTTATTCTTCGTCGCCATCCTTCTCAAAATCAAGATCAAAATCAAAATCAAAACCCCAGTTCACATATGATGTCTTCATCAATTTTAGGGGAGAAGACACTCGGAGGAATTTCGTTTCCCATCTCTATTCTGCCCTCAAAGACACTGGAGTCAACGCTTTTCTGGACGATGAGAAGCTTGATAAGGGAGAAGAGCTGAAATCTGAACTGTTGCATGCAATAGAAGGATCTCAAATAACCATCATTGTTTTCTCCCAAAACTACATTCACTCTACATGGTGTCTTGATGAACTCCTCAAAATCATGGAATGTCATGCTTTTAGAGGACAAGTGATTATGCCAGTGTTTTATGATATTGGCCCCTCATTCTTACGTGACACCGAAGATATTTCTTTCGAAGTCATTTCTGACCAACAGAGCAGGATAAAACTATGGAAGAAAGCACTGACACAAGCAGCAAATTTAGCAGGTTGGGATTTGAGAAATTACAAGTAA 501 0.3952 MPSYSSSPSFSKSRSKSKSKPQFTYDVFINFRGEDTRRNFVSHLYSALKDTGVNAFLDDEKLDKGEELKSELLHAIEGSQITIIVFSQNYIHSTWCLDELLKIMECHAFRGQVIMPVFYDIGPSFLRDTEDISFEVISDQQSRIKLWKKALTQAANLAGWDLRNYK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01430 166 Pfam TIR domain 25 153 IPR000157 GO:0007165
Vimu9g01430 166 SMART till_3 24 157 IPR000157 GO:0007165
Vimu9g01430 166 ProSiteProfiles TIR domain profile. 23 166 IPR000157 GO:0007165
Vimu9g01430 166 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 160 IPR035897 -
Vimu9g01430 166 Gene3D - 19 166 IPR035897 -
Vimu9g01430 166 PANTHER TMV RESISTANCE PROTEIN N-LIKE 18 164 - -
Vimu9g01430 166 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01430 Vimu-Chr9 22925998 22928487 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01430 21 159 Miscellaneous Gene Families AT5G45220 28.671 5.40e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01430 - - vra:111242500 313.923