Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0279 . . . . . . Ahy2g1691 . . . . Apr10g0322 . . . . Car07g03245 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac10g00314 . . Psa4g4752 . . . . Spst4g01568 . . . . . . . Vimu9g01433 . Vivi7g03914 Vra9g0911
Pvu10g0280 . . . . . . Ahy2g1687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g0910
Pvu10g0281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac10g00310 . . Psa4g4753 . . . . Spst4g01574 . . . . . . . Vimu9g01434 . Vivi7g03916 .
Pvu10g0282 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g00964 . . . . . . . . . . . . . . .
Pvu10g0283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3283 . . . . . . . . . Pste6g00988 . . . . . . . . . . . . . . .
Pvu10g0284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3282 . . . . . . . . . . . . . . . . . . . . . Vimu9g01111 . Vivi7g03918 Vra9g1108
Pvu10g0285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1109
Pvu10g0288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0279 Chr10 3936918 3938204 -
Ahy Ahy2g1691 Chr2 87822311 87827828 +
Apr Apr10g0322 Chr10 7730714 7731196 +
Car Car07g03245 Chr07 60087680 60089186 +
Phac Phac10g00314 Chr10 4310157 4311459 -
Psa Psa4g4752 Chr4 418134111 418134752 +
Spst Spst4g01568 Chr4 54781975 54788170 -
Vimu Vimu9g01433 Chr9 22951333 22951847 -
Vivi Vivi7g03914 Chr7 105187940 105195688 +
Vra Vra9g0911 Chr9 10894748 10899083 -
Pvu Pvu10g0280 Chr10 3938344 3940623 -
Ahy Ahy2g1687 Chr2 87733867 87747901 +
Vra Vra9g0910 Chr9 10884157 10888036 -
Pvu Pvu10g0281 Chr10 3960244 3960603 -
Phac Phac10g00310 Chr10 4266015 4271233 -
Psa Psa4g4753 Chr4 418135703 418137101 -
Spst Spst4g01574 Chr4 55005093 55005656 -
Vimu Vimu9g01434 Chr9 23004547 23004930 -
Vivi Vivi7g03916 Chr7 105187940 105195688 +
Pvu Pvu10g0282 Chr10 3961261 3963877 -
Pste Pste6g00964 Chr6 3831883 3832739 +
Pvu Pvu10g0283 Chr10 4002517 4004460 +
Lja Lja3g3283 Chr3 64201023 64206741 +
Pste Pste6g00988 Chr6 3953891 3963044 +
Pvu Pvu10g0284 Chr10 4004926 4006320 +
Lja Lja3g3282 Chr3 64175158 64182691 +
Vimu Vimu9g01111 Chr9 18541151 18542900 +
Vivi Vivi7g03918 Chr7 105187940 105195249 +
Vra Vra9g1108 Chr9 14253376 14257074 +
Pvu Pvu10g0285 Chr10 4019402 4023362 -
Pvu Pvu10g0286 Chr10 4030289 4031111 -
Pvu Pvu10g0287 Chr10 4037819 4041178 +
Vra Vra9g1109 Chr9 14270995 14276982 +
Pvu Pvu10g0288 Chr10 4041283 4043553 +