Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0114 . . . . . . . . . Aev08g0458 . Ahy17g3164 . Aip07g03437 . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00862 . Gma04g00473 Gma06g00467 . . . . . . . . Lal8g0722 . . . . . . . . . . . . . . . . . . . . . Mal2g1066 . . . . . . . Mtr3g3769 . . . . . . . . Psa6g0462 . . . . . . . . . . . . . . . . . . . . Tpr7g0800 . . . Tsu07g00819 . . . . . . . . . . . . .
Vvi4g0115 . . . . . Adu06g02848 . . . . . . . . . . . . . . . Arst6g03699 . Bach3g01980 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu8g00632 . Lasa6g00579 . . . . . . . . . . . . . Mepo4g00619 . Mesa1g00646 . . . . . . . Phco2g00576 . . . . . Pste8g00028 . . Pte3g01143 Pte2g01015 . . . Pvu1g0510 . . . . . Spst8g01536 . . . . . . . Trre1g00676 . . . . . . . . . . . Vivi4g05120 . .
Vvi4g0116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00860 . Gma04g00475 . Gso14g0837 . Gso14g0837 . . . . . Lal8g0720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00859 Gma17g02171 . Gma06g00468 Gso14g0836 Gso14g0836 . Gso14g0836 . . . . Lal8g0719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0119 . . . . . . . . . . . . . Aip07g03440 . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00857 . . . Gso14g0833 . . . . . . . Lal8g0718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g03314 . . . . . . . . . . Gma14g00856 . . . Gso14g0832 . . . . . . . Lal8g0717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0473 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00855 . . . Gso14g0831 . . . . . . . Lal8g0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g00854 . . . Gso14g0830 . . . . . . . Lal8g0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0123 . . . . . . . . Aev07g1029 . Ahy16g3297 . Aip06g03540 . . . Amo16g4010 . . . . . . . . . Bva10g00544 Bva06g02250 . . . . . . Dod08g1883 . . . . . . . . . . . . . . . . . . Lal10g0728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1010 Sto9g3424 . . . . . . . . . . . . . . . . . .
   
Previous Page 424 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0114 Chr4 1037778 1039262 +
Aev Aev08g0458 Chr08 2578941 2580175 -
Ahy Ahy17g3164 Chr17 133448788 133451127 +
Aip Aip07g03437 Chr07 124188558 124189645 +
Gma Gma14g00862 Chr14 9247482 9250143 -
Gma Gma04g00473 Chr04 4217341 4218661 -
Gma Gma06g00467 Chr06 3975806 3977691 -
Lal Lal8g0722 Chr8 5141412 5147883 -
Mal Mal2g1066 Chr2 12419080 12421689 +
Mtr Mtr3g3769 Chr3 51530694 51534673 -
Psa Psa6g0462 Chr6 15348914 15355110 +
Tpr Tpr7g0800 Chr7 7057851 7060004 +
Tsu Tsu07g00819 Chr07 6701334 6701815 +
Vvi Vvi4g0115 Chr4 1044898 1048486 +
Adu Adu06g02848 Chr06 105772864 105777870 +
Arst Arst6g03699 Chr6 104967334 104972337 +
Bach Bach3g01980 Chr3 27577109 27581829 +
Lapu Lapu8g00632 Chr8 24067605 24077451 +
Lasa Lasa6g00579 Chr6 19643635 19649014 -
Mepo Mepo4g00619 Chr4 8460938 8468576 -
Mesa Mesa1g00646 Chr1 8339217 8357618 -
Phco Phco2g00576 Chr2 5498411 5506271 -
Pste Pste8g00028 Chr8 98470 105290 +
Pte Pte3g01143 Chr3 9750663 9771024 +
Pte Pte2g01015 Chr2 10902769 10907297 +
Pvu Pvu1g0510 Chr1 5525275 5533638 -
Spst Spst8g01536 Chr8 16463517 16467790 -
Trre Trre1g00676 Chr1 5081982 5087330 -
Vivi Vivi4g05120 Chr4 182370631 182375919 +
Vvi Vvi4g0116 Chr4 1050345 1050875 +
Vvi Vvi4g0117 Chr4 1062865 1064022 +
Gma Gma14g00860 Chr14 9234483 9237513 -
Gma Gma04g00475 Chr04 4229132 4236804 -
Gso Gso14g0837 Chr14 9179453 9182559 -
Gso Gso14g0837 Chr14 9179453 9182559 -
Lal Lal8g0720 Chr8 5126907 5129891 -
Vvi Vvi4g0118 Chr4 1067809 1073839 +
Gma Gma14g00859 Chr14 9224202 9230893 -
Gma Gma17g02171 Chr17 39352002 39355589 -
Gma Gma06g00468 Chr06 3983390 3989824 -
Gso Gso14g0836 Chr14 9169159 9175832 -
Gso Gso14g0836 Chr14 9169159 9175832 -
Gso Gso14g0836 Chr14 9169159 9175832 -
Lal Lal8g0719 Chr8 5117674 5123812 -
Psa Psa6g0468 Chr6 15611251 15618329 +
Vvi Vvi4g0119 Chr4 1079913 1089984 +
Aip Aip07g03440 Chr07 124242996 124248847 +
Gma Gma14g00857 Chr14 9199865 9210096 -
Gso Gso14g0833 Chr14 9144872 9155129 -
Lal Lal8g0718 Chr8 5105279 5114788 -
Psa Psa6g0472 Chr6 15659189 15668400 +
Vvi Vvi4g0120 Chr4 1090874 1091742 +
Car Car04g03314 Chr04 61623352 61625689 +
Gma Gma14g00856 Chr14 9195055 9198985 -
Gso Gso14g0832 Chr14 9140144 9143968 -
Lal Lal8g0717 Chr8 5101257 5104879 -
Psa Psa6g0473 Chr6 15670238 15674036 +
Vvi Vvi4g0121 Chr4 1096201 1098330 +
Gma Gma14g00855 Chr14 9186930 9190336 -
Gso Gso14g0831 Chr14 9132466 9135967 -
Lal Lal8g0716 Chr8 5096000 5099457 -
Psa Psa6g0474 Chr6 15690563 15693112 +
Vvi Vvi4g0122 Chr4 1099487 1103689 -
Gma Gma14g00854 Chr14 9178920 9181540 +
Gso Gso14g0830 Chr14 9124769 9127533 +
Lal Lal8g0715 Chr8 5092340 5094961 +
Psa Psa6g0476 Chr6 15702314 15705162 -
Vvi Vvi4g0123 Chr4 1104633 1110772 -
Aev Aev07g1029 Chr07 7710750 7717389 -
Ahy Ahy16g3297 Chr16 149852921 149857937 +
Aip Aip06g03540 Chr06 132817755 132827584 +
Amo Amo16g4010 Chr16 152252683 152257855 +
Bva Bva10g00544 Chr10 5044557 5049237 +
Bva Bva06g02250 Chr06 14689499 14693941 -
Dod Dod08g1883 Chr08 44924879 44925136 +
Lal Lal10g0728 Chr10 15029943 15037044 +
Sto Sto5g1010 Chr5 6800153 6804219 +
Sto Sto9g3424 Chr9 33816931 33821150 -
Aev Aev07g1029 Chr07 7710750 7717389 -
Ahy Ahy16g3297 Chr16 149852921 149857937 +
Aip Aip06g03540 Chr06 132817755 132827584 +
Amo Amo16g4010 Chr16 152252683 152257855 +
Dod Dod08g1883 Chr08 44924879 44925136 +