Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0118 ATGGAACGTGCACGGCGGATTGCGAACCGGGCGATTCTGCGTCGCCTGGTTTCGGAGTCTAAGCAGCAGAGGCCGTGCCCGAGGCCCCAGAATGAGGGCTTGGTGAATTCTTCTTTTTCGGGTTGGAGGTATGTTTCCTCATTGCCTACTTGTGCTTTTCCCAATAAAACTGTGAGATCAGACGTGTTATTAGGGAGAAATGTGATGTCTAGTGTTGGTTTTGGTATGGGGTGTCAAACCCGGTCTATATCGGTTGAGGCATTGAAGCCTAGTGATACTTTCCCCCGCCGGCATAATTCGGCAACCCCAGAGGAACAGACCAAAATGGCTGAGTCTTGTGGGTATGAGAGTCTGGACTCTCTTGTTGATGCCACAGTGCCTAAGTCGATTCGACTCGAATCGTTGAAGTTTAGTAAGTTTGATGAGGGGCTTACAGAGAGTCAAATGATTGAACATATGATGCAGTTGGCAGCTAAGAATAAGGTTTTTAAGTCGTATATTGGGATGGGATATTATAACACTTTTGTTCCCCCAGTGATTCTAAGAAACATCATGGAAAATCCGGGTTGGTATACCCAGTACACACCCTACCAGGCTGAGATTGCCCAAGGACGTTTGGAGTCATTGCTGAATTACCAGACCTTGATTTCTGATTTAACTGGCCTACCCATGTCCAACGCATCGTTACTTGATGAAGGAACTGCTGCAGCTGAGGCAATGGCTATGTGTAATAACATTATGAAGGGAAAGAAGAAAACTTTTATTATTGCTAGCAATTGCCACCCACAGACAATTGATATTTGTAAGACTAGAGCTGAAGGTTTTGATCTTAAAGTAGTTACTGCTGATCTTAAGGATATTGATTACAAATCGGGTGATGTTTGTGGTGTCCTGGTTCAGTATCCAGACACTGAGGGTGAAGTTCTGGATTACGGGGAGTTCATAAAGAATGCTCATGCTAATGGGGTTAAGGTTGTTATGGCAAGTGATCTGTTGGCATTGACAATGTTGAAGCCTCCAGGTGAGTTTGGGGCAGATATTGTTGTTGGCTCAGCTCAGCGGTTTGGAGTACCGATGGGGTATGGTGGTCCTCATGCTGCTTTCTTGGCCACCTCCCAAGAGTACAAGAGGATGATGCCAGGAAGAATTATTGGAGTCAGTGTTGATGCTTCAGGAAAGCCTGCTCTGCGTATGGCAATGCAGACGAGAGAACAACATATCCGGAGGGACAAGGCTACGAGCAACATATGCACTGCTCAGGCATTACTTGCAAATATGGCTGCTATGTTTGCTGTTTATCATGGGCCTGAAGGCCTTAAAACCATTGCTCAACGTGTCCATGGTCTTGCTGGGGTATTTGCACTTGGACTGAAGAAACTTGGGACAGTGGAAGTCCAGGGCCTTCCCTTCTTTGACACCGTGAAGGTTAAGTGTGCTGATGCACATGCGATTGCTGATGCTGCTTGCAAGAGTGAGATAAATTTGCGAATTGTGGACTCAAAAACAATCACTGTTTCCTTTGATGAAACAACAACAATAGAGGATGTGGACAAGCTTTTCAAAGTTTTTGCATGTGGCAAGCCTGTCAATTTCACTGCTGCATCCCTTGCACCAGAAGTTCAGACTGTGATCCCTTCTGGGCTCATAAGAGAAAGCCCATTTCTCACTCATCCAATCTTCAACTTGTATCATACAGAACATGAGTTGCTAAGATACATGCAAAGGCTACAATCAAAGGATCTTTCATTATGCCATAGTATGATTCCTTTGGGATCTTGTACAATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGACTCTTTCTCATTGCAACCCAATGCTGGTGCTTCTGGCGAGTATGCTGGCCTGATGGTTATTCGTGCATATCATAAGTCAAGAGGAGACCACCACCGTGATGTGTGCATCATACCTGTTTCGGCACATGGGACTAATCCTGCAAGTGCTGCTATGTGTGGAATGAAAATTGTTGCTGTTGGAACTGATGCCAAGGGAAACATCAACATTGAAGAGTTAAGGAAGGCTGCTGAAGCAAATAAGGAAAACCTATCTGCTCTTATGGTTACATATCCTTCAACCCATGGAGTCTATGAAGAAGGGATAGATGAAATATGTAAGATAATTCATGACAATGGAGGTCAAGTTTACATGGATGGTGCTAACATGAATGCACAGGTGGGTCTCACAAGCCCAGGTTGGATTGGAGCTGATGTTTGCCATCTAAATCTCCACAAAACATTTTGCATTCCCCATGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGTGAAAAAACACCTGGCACCATTTCTGCCTTCCCATCCTGTGGTATCTACGGGTGGTATACCAGCTCCTGACAAATTACAGCCACTTGGTACCATATCTGCTGCACCTTGGGGCTCTGCACTTATTTTGCCAATATCATATACTTACATAGCAATGATGGGATCTAAGGGACTCACTGATGCATCAAAGATAGCTATTCTCAATGCAAACTACATGGCAAAACGTTTGGAGAAGCACTATCCCATTCTTTTCCGTGGCGTCAATGGAACAGTTGCCCATGAATTCATTGTTGACTTGAGAGGCTTCAAGAATACTGCTGGGATAGAGCCTGAAGATATTGCTAAGCGTCTTATGGACTATGGATTTCATGGACCGACAATGTCATGGCCAGTGCCTGGTACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCAGAGTTAGACAGGTTTTGTGATGCTCTTATCTCCATTAGAAAAGAAATTGCACAGATTGAGAATGGAAAAGCTGACGTTCACAACAATGTCCTAAAGGGTGCTCCTCATCCCCCATCCCTGCTTATGGGAGATACCTGGACAAAACCATACTCTCGGGAATATGCAGCCTTCCCAGCTCCCTGGCTTCGGGTTGCCAAGTTCTGGCCAACTACAGGACGTGTTGACAATGTGTACGGTGACCGCAACCTCATCTGCACTCTTCTTCCAGCATCACAGATTGAAGAACAAGCTGCAGCTACTGCCTAG 3162 0.4522 MERARRIANRAILRRLVSESKQQRPCPRPQNEGLVNSSFSGWRYVSSLPTCAFPNKTVRSDVLLGRNVMSSVGFGMGCQTRSISVEALKPSDTFPRRHNSATPEEQTKMAESCGYESLDSLVDATVPKSIRLESLKFSKFDEGLTESQMIEHMMQLAAKNKVFKSYIGMGYYNTFVPPVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNYQTLISDLTGLPMSNASLLDEGTAAAEAMAMCNNIMKGKKKTFIIASNCHPQTIDICKTRAEGFDLKVVTADLKDIDYKSGDVCGVLVQYPDTEGEVLDYGEFIKNAHANGVKVVMASDLLALTMLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDASGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMFAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIADAACKSEINLRIVDSKTITVSFDETTTIEDVDKLFKVFACGKPVNFTAASLAPEVQTVIPSGLIRESPFLTHPIFNLYHTEHELLRYMQRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPGFTDIHPFAPTEQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGASGEYAGLMVIRAYHKSRGDHHRDVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPDKLQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGFKNTAGIEPEDIAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAQIENGKADVHNNVLKGAPHPPSLLMGDTWTKPYSREYAAFPAPWLRVAKFWPTTGRVDNVYGDRNLICTLLPASQIEEQAAATA* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0118 1053 FunFam Glycine cleavage system P protein 431 519 - -
Vvi4g0118 1053 SUPERFAMILY PLP-dependent transferases 97 523 IPR015424 -
Vvi4g0118 1053 Coils Coil 710 733 - -
Vvi4g0118 1053 Gene3D - 177 437 IPR015421 GO:0003824
Vvi4g0118 1053 Gene3D - 604 834 IPR015421 GO:0003824
Vvi4g0118 1053 Gene3D Aspartate Aminotransferase, domain 1 853 992 IPR015422 GO:0003824
Vvi4g0118 1053 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 605 844 - -
Vvi4g0118 1053 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 177 437 - -
Vvi4g0118 1053 NCBIfam aminomethyl-transferring glycine dehydrogenase 97 1038 IPR003437 GO:0004375|GO:0006544
Vvi4g0118 1053 CDD GDC-P 566 961 IPR020581 GO:0004375|GO:0006546
Vvi4g0118 1053 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 88 1045 IPR003437 GO:0004375|GO:0006544
Vvi4g0118 1053 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 79 1045 IPR020581 GO:0004375|GO:0006546
Vvi4g0118 1053 CDD GDC-P 146 523 IPR020581 GO:0004375|GO:0006546
Vvi4g0118 1053 SUPERFAMILY PLP-dependent transferases 563 1039 IPR015424 -
Vvi4g0118 1053 Pfam Glycine cleavage system P-protein 97 523 IPR020581 GO:0004375|GO:0006546
Vvi4g0118 1053 Pfam Glycine cleavage system P-protein 541 816 IPR020581 GO:0004375|GO:0006546
Vvi4g0118 1053 Gene3D Aspartate Aminotransferase, domain 1 166 519 IPR015422 GO:0003824
Vvi4g0118 1053 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 854 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0118 Vvi-Chr4 1067809 1073839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0118 K00281 - vvi:100266170 2101.63