Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal25g0634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0087 . Acco05g2267 . Accr3g00738 . Adu06g02810 . . . . . Ahy17g3147 . Aip07g03418 . Alju07g2233 . . . . . Arst6g03646 . Bach3g01949 . . . . . . . . . Dere05g2161 . . . Enph7g0965 . Glsi10g0705 . . . . . . . . . . . Lal25g0634 Lal8g0834 Lal10g0729 . . . . . . . Lapu8g00613 . Lasa5g04072 . . . . . . . . . . . . . Mepo4g00640 . . . Mibi08g1960 . . . Phac1g00698 . Phco2g00598 . Prci2g1005 . . . . . . . . . . . Pvu1g0528 . . . . . Spst8g01553 . . . . . . . . . . . . . . . Vimu1g02600 . . . Vivi4g05089 . .
Vvi4g0088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0089 . . . . . . . . . Aev08g0475 . Ahy17g3148 . Aip07g03419 . . . . . . . . . . . . . . . . . . . . . Dod08g1867 . . . . Gma14g00925 . . . Gso14g0884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0090 . . . . . . . . . . . Ahy17g3149 . Aip07g03420 . . . . . . . . . . . . . . . . . . . . . Dod08g1868 . . . . Gma14g00884 . . . Gso14g0854 . . . . . . . Lal8g0835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0091 . . . . . . . . . Aev08g0474 . Ahy17g3150 . Aip07g03421 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0093 . . . . . . . . . Aev08g0472 . Ahy17g3151 . Aip07g03423 . . . . . . . . . . . . . . . . Cca03g01729 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g1053 . . . . . . . Mtr3g3779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g0790 . . . Tsu07g00801 . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0084 Chr4 855082 855195 -
Vvi Vvi4g0085 Chr4 855317 855654 -
Vvi Vvi4g0086 Chr4 855695 856165 -
Lal Lal25g0634 Chr25 4878955 4883014 -
Vvi Vvi4g0087 Chr4 861243 863278 +
Acco Acco05g2267 Chr05 38680019 38685559 +
Accr Accr3g00738 Chr3 8263770 8271896 -
Adu Adu06g02810 Chr06 105314968 105321467 -
Ahy Ahy17g3147 Chr17 133232370 133235509 +
Aip Aip07g03418 Chr07 123968904 123972021 +
Alju Alju07g2233 Chr07 48302467 48310147 +
Arst Arst6g03646 Chr6 104509920 104516267 -
Bach Bach3g01949 Chr3 27403515 27408252 -
Dere Dere05g2161 Chr05 31767751 31788503 -
Enph Enph7g0965 Chr7 15366898 15373533 +
Glsi Glsi10g0705 Chr10 4491803 4497667 +
Lal Lal25g0634 Chr25 4878955 4883014 -
Lal Lal8g0834 Chr8 6047004 6051254 +
Lal Lal10g0729 Chr10 15037868 15041913 +
Lapu Lapu8g00613 Chr8 23756864 23767078 -
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Mepo Mepo4g00640 Chr4 8711699 8717905 +
Mibi Mibi08g1960 Chr08 36587027 36592819 +
Phac Phac1g00698 Chr1 5537113 5543916 +
Phco Phco2g00598 Chr2 5839177 5848205 +
Prci Prci2g1005 Chr2 7456177 7463248 -
Pvu Pvu1g0528 Chr1 5858480 5866501 +
Spst Spst8g01553 Chr8 17196576 17204500 +
Vimu Vimu1g02600 Chr1 37533905 37536711 -
Vivi Vivi4g05089 Chr4 181864941 181871193 -
Vvi Vvi4g0088 Chr4 863374 863798 +
Vvi Vvi4g0089 Chr4 865584 865931 +
Aev Aev08g0475 Chr08 2669175 2674085 -
Ahy Ahy17g3148 Chr17 133237448 133238283 +
Aip Aip07g03419 Chr07 123974052 123974864 +
Dod Dod08g1867 Chr08 44277491 44278685 +
Gma Gma14g00925 Chr14 10423861 10429313 -
Gso Gso14g0884 Chr14 10360668 10364645 -
Vvi Vvi4g0090 Chr4 871475 877273 +
Ahy Ahy17g3149 Chr17 133240913 133244382 +
Aip Aip07g03420 Chr07 123977516 123980577 +
Dod Dod08g1868 Chr08 44286430 44291672 +
Gma Gma14g00884 Chr14 9610808 9616168 -
Gso Gso14g0854 Chr14 9555633 9561154 -
Lal Lal8g0835 Chr8 6052809 6057885 +
Vvi Vvi4g0091 Chr4 880759 883598 -
Aev Aev08g0474 Chr08 2664776 2667186 +
Ahy Ahy17g3150 Chr17 133248725 133251236 -
Aip Aip07g03421 Chr07 123985460 123987897 -
Vvi Vvi4g0092 Chr4 890887 891504 -
Vvi Vvi4g0093 Chr4 896969 900789 +
Aev Aev08g0472 Chr08 2658510 2660556 -
Ahy Ahy17g3151 Chr17 133270008 133273201 +
Aip Aip07g03423 Chr07 124010532 124013754 +
Cca Cca03g01729 Chr03 36410342 36413534 +
Mal Mal2g1053 Chr2 12279498 12284188 +
Mtr Mtr3g3779 Chr3 51647899 51652635 -
Tpr Tpr7g0790 Chr7 6970581 6975957 +
Tsu Tsu07g00801 Chr07 6573752 6577608 +
Acco Acco05g2267 Chr05 38680019 38685559 +
Accr Accr3g00738 Chr3 8263770 8271896 -
Adu Adu06g02810 Chr06 105314968 105321467 -
Alju Alju07g2233 Chr07 48302467 48310147 +
Arst Arst6g03646 Chr6 104509920 104516267 -
Bach Bach3g01949 Chr3 27403515 27408252 -
Dere Dere05g2161 Chr05 31767751 31788503 -
Enph Enph7g0965 Chr7 15366898 15373533 +
Glsi Glsi10g0705 Chr10 4491803 4497667 +
Lapu Lapu8g00613 Chr8 23756864 23767078 -
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Mepo Mepo4g00640 Chr4 8711699 8717905 +
Mibi Mibi08g1960 Chr08 36587027 36592819 +
Phac Phac1g00698 Chr1 5537113 5543916 +
Phco Phco2g00598 Chr2 5839177 5848205 +
Prci Prci2g1005 Chr2 7456177 7463248 -
Pvu Pvu1g0528 Chr1 5858480 5866501 +
Spst Spst8g01553 Chr8 17196576 17204500 +
Vimu Vimu1g02600 Chr1 37533905 37536711 -
Vivi Vivi4g05089 Chr4 181864941 181871193 -
Gma Gma14g00925 Chr14 10423861 10429313 -
Gso Gso14g0884 Chr14 10360668 10364645 -
Gso Gso14g0884 Chr14 10360668 10364645 -
Gso Gso14g0884 Chr14 10360668 10364645 -