Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01729 ATGTTCTTCTATGGGTGTATGTTCTCTTTTAACTTTAATTTATGTTATCTACAGACAAGGACAGCTGGATTTCACTCTATTGGGGTGTATCAATCTTTGAATAAGATACTGAAGCATGAAGGTTTCCAAGGATTATACAAAGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCTGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAACAATTATCCTGTGCTGGGAACGGGTCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCAGGAGGAACTTCAGTTTTGTGTACCTACCCCTTGGATCTTGCTCGAACCAAACTTGCTTACCAGGTGGCAGACACGAGAGGAAGTATCAAAGATGGTGTGAAAGGAGTTCAATATCAAACTGCAAATAATGGCATTAAAGGTGTGCTTACAAGTGTTTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACACTTACCGGAATTCTTCCCTATGCTGGTTTAAAGTTCTACATGTATGAGAAACTGAAGACTCATGTCCCTGAAGAACATCAGAAGTCCATTTTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTCGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGCCAGCCTGCAAAATGCTGCTCATGAGGAAGACAGATTCAAAAATACATTTGATGGACTTAGGAAGATTGCTCGTAATCAAGGGTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCCGCAATTAGTTTCACCACATATGACATGATGAAGAGTTGGCTTGGCGTACCACCTCAACAAAAGTCTCGATCAGTTTCGGCAGCATGA 897 0.4192 MFFYGCMFSFNFNLCYLQTRTAGFHSIGVYQSLNKILKHEGFQGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPVLGTGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGSIKDGVKGVQYQTANNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVASLQNAAHEEDRFKNTFDGLRKIARNQGWRQLFHGVSINYIRIVPSAAISFTTYDMMKSWLGVPPQQKSRSVSAA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01729 298 PRINTS Mitochondrial carrier protein signature 48 68 IPR002067 GO:0055085
Cca03g01729 298 PRINTS Mitochondrial carrier protein signature 98 116 IPR002067 GO:0055085
Cca03g01729 298 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Cca03g01729 298 PRINTS Mitochondrial carrier protein signature 200 222 IPR002067 GO:0055085
Cca03g01729 298 Gene3D Mitochondrial carrier domain 6 285 IPR023395 -
Cca03g01729 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 83 184 IPR018108 -
Cca03g01729 298 SUPERFAMILY Mitochondrial carrier 15 279 IPR023395 -
Cca03g01729 298 PANTHER SOLUTE CARRIER FAMILY 25 16 292 - -
Cca03g01729 298 Pfam Mitochondrial carrier protein 29 77 IPR018108 -
Cca03g01729 298 Pfam Mitochondrial carrier protein 84 186 IPR018108 -
Cca03g01729 298 Pfam Mitochondrial carrier protein 191 284 IPR018108 -
Cca03g01729 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 73 IPR018108 -
Cca03g01729 298 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 16 292 - -
Cca03g01729 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 191 283 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01729 Cca-Chr3 36410342 36413534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01729 65 293 Organic Solute Cotransporters AT1G14560 67.532 4.98e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01729 - - ccaj:109795872 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01729 03 36410342 36413534 Cca03g01729 03 36410342 36413534 ECH