Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0093 ATGGGTTCTTCACAAGGGTCTACCCTGTCCACAAATGTGGCAGGGTTTGTCGATGGGTCAACAGCTCGTACAGAGGTATCATACATTGATACCATGCCTGTTTATGTTAAGGAGCTTATTGCCGGAGGTGCTGCCGGAGCATTTGCCAAGACTGCCGTTGCCCCATTGGAAAGGACTAAAATACTCTTGCAGACAAGAACAGAAGGATTCCATTCTCTTGGTGTGTATCAATCTCTGAAGAAGATACTAAAGCATGAAGGTGTTCTAGGATTTTATAAAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCCCTAGGAACAGGGCCGGTGGTGGATCTTTTAGCTGGTTCTGTCGCCGGAGGGACAGCAGTTTTGTGCACATACCCATTAGATCTGGCTCGAACTAAGCTTGCATATCAGGTTGTTGACCTGAGAGGAAGTTTCAGAAGTGACATGAGAAGTTTGCAAGCTCAGCCTGCTTATAATGGCATAAAAGATGTTTTTAAAAGTGTCTACAAGGAAGGGGGAGTACGGGCACTGTATCGAGGTGTAGGTCCGACACTCATTGGAATCCTTCCTTATGCTGGATTGAAGTTTTACATATATGAAAAACTTAAGAGGCATGTTCCTGAAGAGCACCAAAAGTCTATTGCAATGCGTCTGTCATGTGGGGCATTAGCTGGCCTGTTAGGGCAGACCTTCACATACCCATTGGATGTTGTTAGGAGACAGATGCAGGTCGAAAATCTGCAACCTTCAATTCAAGGTAATGCTAGATACAGGAACACTTTGGAAGGGCTAGCGACTATCACCCGTAATCAAGGATGGAGACAATTGTTTGCAGGCCTAAGCATCAATTATATAAAGATCGTTCCGTCGGTGGCAATCGGCTTCACTGCATATGACATGATCAAATCATGGCTTCGCGTGCCACCACGACAGAAGGCTCAGTCCATATCTGCTGCATGA 1035 0.4551 MGSSQGSTLSTNVAGFVDGSTARTEVSYIDTMPVYVKELIAGGAAGAFAKTAVAPLERTKILLQTRTEGFHSLGVYQSLKKILKHEGVLGFYKGNGASVLRIVPYAALHFMTYEQYRSWILNNCPALGTGPVVDLLAGSVAGGTAVLCTYPLDLARTKLAYQVVDLRGSFRSDMRSLQAQPAYNGIKDVFKSVYKEGGVRALYRGVGPTLIGILPYAGLKFYIYEKLKRHVPEEHQKSIAMRLSCGALAGLLGQTFTYPLDVVRRQMQVENLQPSIQGNARYRNTLEGLATITRNQGWRQLFAGLSINYIKIVPSVAIGFTAYDMIKSWLRVPPRQKAQSISAA* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0093 344 PANTHER SOLUTE CARRIER FAMILY 25 35 332 - -
Vvi4g0093 344 FunFam mitochondrial coenzyme A transporter SLC25A42 30 332 - -
Vvi4g0093 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 119 IPR018108 -
Vvi4g0093 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 230 IPR018108 -
Vvi4g0093 344 Gene3D Mitochondrial carrier domain 29 332 IPR023395 -
Vvi4g0093 344 SUPERFAMILY Mitochondrial carrier 35 325 IPR023395 -
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 246 268 IPR002067 GO:0055085
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Vvi4g0093 344 PRINTS Mitochondrial carrier protein signature 144 162 IPR002067 GO:0055085
Vvi4g0093 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 329 IPR018108 -
Vvi4g0093 344 Pfam Mitochondrial carrier protein 237 330 IPR018108 -
Vvi4g0093 344 Pfam Mitochondrial carrier protein 35 122 IPR018108 -
Vvi4g0093 344 Pfam Mitochondrial carrier protein 130 232 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0093 Vvi-Chr4 896969 900789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0093 29 312 Organic Solute Cotransporters AT4G26180 60.351 2.41e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0093 - - vvi:100256030 673.315