Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01135 ATGGTAAAGGACACTAAAACAATAGGGTCTGCTTATGACCGCTACCTTCAGAGTGCGGGGCTTACTTCATTTAATTCTGGGGAAGCTAGTGTAATTGGTGGCGTTGGATTGGCAAGGGGTGTTGGTGGAATGCCAGGCCATTCTCTAGGTGATCCTACTGTCATGCAGCATCCTGGTGGTGGCCCTGATCTTGCACGAAATGGGCGTAATGCCAATTTTGGTGGTCAGTTACCTATAAATGCAATTTCCAGGCCTGGACCTGAGACAATACCACTACCCCCAGATGCTTCAAGTACTTTATATGTTGAAGGGCTCCCATCTGACTGCACAAGAAGGGAAGTGGCTCATATTTTTCGCCCTTTTGTCGGATATAGAGAAGTGAGACTTGTGACCAAAGAATCCAAACATCGAGGTGGAGATCCTTTAATCCTATGTTTTGTAGATTTTGCAAATCCGGCATGTGCAGCAACTGCTTTGAGTGCCTTGCAAGGTTATAAAGTTGATGAACTCAGTCCTGAGTCCACTCACTTGCGGCTTCAGTTTTCTCGGTCTCCTGGCCCTAGAAGTGGACTTGGACCTCGCGGCAAGAGTTATTGCAGCTTATATTATGATGGCTACTGA 621 0.467 MVKDTKTIGSAYDRYLQSAGLTSFNSGEASVIGGVGLARGVGGMPGHSLGDPTVMQHPGGGPDLARNGRNANFGGQLPINAISRPGPETIPLPPDASSTLYVEGLPSDCTRREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESTHLRLQFSRSPGPRSGLGPRGKSYCSLYYDGY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01135 206 Gene3D - 94 185 IPR012677 -
Car04g01135 206 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 196 - -
Car04g01135 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 184 IPR000504 GO:0003723
Car04g01135 206 CDD RRM_RBPMS_like 98 180 - -
Car04g01135 206 SUPERFAMILY RNA-binding domain, RBD 73 192 IPR035979 GO:0003676
Car04g01135 206 PANTHER RNA-BINDING PROTEIN 2 1 196 - -
Car04g01135 206 SMART rrm1_1 99 173 IPR000504 GO:0003723
Car04g01135 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01135 Car-Chr4 11583743 11585532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01135 - - pvu:PHAVU_007G078500g 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01135 04 11583743 11585532 Car04g01135 04 11583743 11585532 ECH
Car08g01119 08 11500124 11508974 Car04g01135 04 11583743 11585532 PCT