Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3670 ATGGCAGATGGCTTCTGGAATCGACAGCAGCAGCATCTCCCTCCTCCCGGCGGCATGCTCAAAAGACCCCGTACTGAATATGATACGGCACCTTCTGGTGTAACCTCAGGCAATGAGGTGCATAATTATATTGCTCAAAACAATGGTCACCAAATGCTAAACGACACTAAAATACTCGGGTCTGCTTATGACCGCTTCCTTCAGAGTGCAGGGCTTACTTCATTTAATTCTGGGGAGGCTAGTGTAATTGGTGGTGTTGGATTTGCAAGGGGTGTTGGTGAATTGCCAGGCCATTCTCTGGGTGATCCTTCTGCCATGGGGCATCTTAGTGGTGTTGGTGGTGGCCCTGATCTTTCACGAAATGGGCGTGATGTCAATTTTGGTGGTCAGCTACCTATAGATGCAGTTTCCAGGCCCGGGCCTGAGACAATACCACTACCCCGAGATGCTTCAAGTACTTTATATGTTGAAGGGCTCCCATCTGACAGCACAAAAAGAGAAGTGGCTCATATTTTTCGCCCTTTTGTCGGATATAGAGAAGTAAGACTTGTGGCCAAAGAATCCAAACATCGAGGTGGAGATCCTTTAATCCTTTGTTTTGTAGATTTTGCAAATCCGGCTTGTGCAGCAACTGCCTTGAGCGCCTTGCAAGGCTATAAAGTTGATGAAATCAATCCTGAGTCAAGCTACTTGCGCCTTCAGTTTTCTCGGTCTCCTGGCCGAAGAAGTGGCGGGCCTGGACCTCGCGGCAAGAGGTGA 759 0.4862 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNNGHQMLNDTKILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGRRSGGPGPRGKR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3670 252 Gene3D - 148 239 IPR012677 -
Mtr1g3670 252 CDD RRM_RBPMS_like 152 234 - -
Mtr1g3670 252 PANTHER RNA-BINDING PROTEIN 2 7 252 - -
Mtr1g3670 252 SMART rrm1_1 153 227 IPR000504 GO:0003723
Mtr1g3670 252 MobiDBLite consensus disorder prediction 232 252 - -
Mtr1g3670 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
Mtr1g3670 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 238 IPR000504 GO:0003723
Mtr1g3670 252 SUPERFAMILY RNA-binding domain, RBD 128 249 IPR035979 GO:0003676
Mtr1g3670 252 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 252 - -
Mtr1g3670 252 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3670 Mtr-Chr1 48392468 48397766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3670 - - gmx:100813445 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3670 1 48392468 48397766 Mtr1g3670 1 48392468 48397766 ECH
Mtr6g0955 6 12625714 12632739 Mtr1g3670 1 48392468 48397766 PCT