Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2026 ATGACGGACGGTTCCTGGAATCGACAGCAGTCGTTTCTCCCTCCTTCCGCCATGCTCAAGCGACCTCGTACTGAATACGATATGTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATATTGCTCGAAATGATGACCATACTGGTCACCGAATTCTAAAGGACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGCGCTGGGCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTGGGAAGGGGTGTTGGTGGATTGCCACATCATTCACTAACTGATCCTGCTGTCACGGGGCATCCTGGTGGTGGTCATGATCTTTCACGAAATGGACGTAATGTCAATTATGCCAGTCAGTTACCAGTAGATGCAGCTTCCATGCCTGGACCTGAGACTCTACCTCTACCCCCAGATGCTTCAAGTACTTTATACGTTGAAGGTCTCCCATCTGGCAGCACGAGACGGGAAGTAGCTCATATTTTTCGCCCTTTCGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATCGTGGCGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAGGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACTTCGTGGCAAGAGGTGA 756 0.4802 MTDGSWNRQQSFLPPSAMLKRPRTEYDMSPSGLTSGGNEMHNYIARNDDHTGHRILKDTKTLGSAYDRYLQSAGLTSFNSGEASAISSVGLGRGVGGLPHHSLTDPAVTGHPGGGHDLSRNGRNVNYASQLPVDAASMPGPETLPLPPDASSTLYVEGLPSGSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNPESSHLRLQFSRFPGPRSGPGLRGKR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2026 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
Gso10g2026 251 CDD RRM_RBPMS_like 152 234 - -
Gso10g2026 251 Gene3D - 148 238 IPR012677 -
Gso10g2026 251 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 251 - -
Gso10g2026 251 SMART rrm1_1 153 227 IPR000504 GO:0003723
Gso10g2026 251 MobiDBLite consensus disorder prediction 102 123 - -
Gso10g2026 251 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g2026 251 PANTHER RNA-BINDING PROTEIN 2 6 251 - -
Gso10g2026 251 SUPERFAMILY RNA-binding domain, RBD 130 245 IPR035979 GO:0003676
Gso10g2026 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2026 Gso-Chr10 47266446 47272882 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2026 - - gmx:100816230 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2026 10 47266446 47272882 Gso10g2026 10 47266446 47272882 ECH
Gso20g1331 20 43379690 43384996 Gso10g2026 10 47266446 47272882 GST