Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2143 ATGGCGGACGGCTTCTGGAATCGACAGCAGCCGCATCTCCCTCCTCCCGGAGGCATGCTCAAAAGACCTCGTACTGAATATGATACGGCACCTTCTGGTCTGACCTCAGGTAATGAGGTGCATAATTATATTGCTCAAAGCAATGGTCACCAAATGCTAAAGGACACTAAAACACTCGGGTCTGCTTATGACCGCTTCCTTCAGAATGCAGGGCTTACTTCATTTAATTCTGGGGAAGCTAGTGTAATTGGTGGTGTTGGATTGGCAAGGGGTGTTGGTGGAATGCCAGGCCATTCTCTAGGTGATCCTTCTGCCATGGGGCGTCCTAGTGGTGTTGGTGGTGGCCCTGATCTTGCACGAAATGGGCGTAATGTCAATTTTGGTGGTCAGCTACCTATAGATGCAGTTTCCAGGCCCGGACCTGAGACAATACCACTACCCCGAGATGCTTCAAATACTTTATATGTTGAAGGGCTCCCATCTGACAGCACAAAAAGAGAAGTGGCTCATATCTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGACCAAAGAATCCAAACATCGAGGTGGAGATCCTTTAATCCTCTGTTTTGTAGATTTTGCAAATCCGGCTTGTGCAGCAACTGCCTTGAGCGCTTTGCAAGGTTATAAAGTTGATGAACTTAATCCTGATTCTAGTTACTTGCGGCTTCAGTTTTCTCGGTCTCCTGGCCCTAGAAGTGGCGGGCCTGGACCTCGCGGCAAGAGGTGA 759 0.4835 MADGFWNRQQPHLPPPGGMLKRPRTEYDTAPSGLTSGNEVHNYIAQSNGHQMLKDTKTLGSAYDRFLQNAGLTSFNSGEASVIGGVGLARGVGGMPGHSLGDPSAMGRPSGVGGGPDLARNGRNVNFGGQLPIDAVSRPGPETIPLPRDASNTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNPDSSYLRLQFSRSPGPRSGGPGPRGKR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2143 252 MobiDBLite consensus disorder prediction 231 252 - -
Mal1g2143 252 CDD RRM_RBPMS_like 152 234 - -
Mal1g2143 252 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 252 - -
Mal1g2143 252 SUPERFAMILY RNA-binding domain, RBD 128 249 IPR035979 GO:0003676
Mal1g2143 252 PANTHER RNA-BINDING PROTEIN 2 8 252 - -
Mal1g2143 252 SMART rrm1_1 153 227 IPR000504 GO:0003723
Mal1g2143 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
Mal1g2143 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 238 IPR000504 GO:0003723
Mal1g2143 252 MobiDBLite consensus disorder prediction 1 38 - -
Mal1g2143 252 Gene3D - 148 239 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2143 Mal-Chr1 28129121 28135057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2143 - - gmx:100813445 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2143 1 28129121 28135057 Mal1g2143 1 28129121 28135057 ECH
Mal8g3709 8 107085702 107093482 Mal1g2143 1 28129121 28135057 PCT