Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1394 ATGTACAATTCGTGTATATTTTTTGGGCTCGCAGAGGAGAGGACAGCTAGGGTTTCAGCAAAATCCCAATTCCACCATCGCAGAAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATGATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAGTTCAAGGTGATGATCTTGGTGGCCCCCGATCTGTAAAGGACTCAAAGACTGTTGGATTGGCATATGACCAATATTTCCAGGATATTCCTTCTTTTACTTCTGGAGCAGCTAGTGATTTTCGTGGGGTTGGGTTAGGAACAGCAACTGGTGAAGCAATATCTGGTCTTTCAATTTCTGGTCCTGCTGTTATGGATCATTTGGAGGCCCTGGATTCTGATCTACCACCAAGTGGTCAAGGCAGGCGTTTTGGTCATCAGCTGGATGCAATTATCAGACCAAGCCGGGAAACGGCTCCTCTACCTCCTGATGCATCCAGCACTCTTTATGTTGAGGGGCTTCCTCCTGACAGCACAAGGAGGGAAGTAGCTCATATTTTTCGCCCATTTGTGGGGTATAAAGAAGTAAGACTCGTGAGCAAAGAATCCAAGCATCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAGGTTATAAGATCAGCGAACATGATCGTGATTCTGCCCAAATGAGATTGCAGTTTTCTCAGTACCCAGATCCAAGGTCTGGCTCTGGATCCCGTGGGAAGCGCAAAACAAGCTTCAAGAGAGGGCGCCCAAGCAGAATGAAGTCTCATGTACTTCGCTGA 879 0.4755 MYNSCIFFGLAEERTARVSAKSQFHHRRRPGMADRFWSRQYFGVPKRPRSDYDLPYSGLPSGNEVHNYLVQGDDLGGPRSVKDSKTVGLAYDQYFQDIPSFTSGAASDFRGVGLGTATGEAISGLSISGPAVMDHLEALDSDLPPSGQGRRFGHQLDAIIRPSRETAPLPPDASSTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESKHRGRDPLVLCFVDFTSPACAATALSALQGYKISEHDRDSAQMRLQFSQYPDPRSGSGSRGKRKTSFKRGRPSRMKSHVLR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1394 292 SMART rrm1_1 176 253 IPR000504 GO:0003723
Vvi18g1394 292 SUPERFAMILY RNA-binding domain, RBD 156 271 IPR035979 GO:0003676
Vvi18g1394 292 MobiDBLite consensus disorder prediction 259 292 - -
Vvi18g1394 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 246 IPR000504 GO:0003723
Vvi18g1394 292 MobiDBLite consensus disorder prediction 272 292 - -
Vvi18g1394 292 CDD RRM_AtNSRA_like 172 259 - -
Vvi18g1394 292 Gene3D - 171 261 IPR012677 -
Vvi18g1394 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 261 IPR000504 GO:0003723
Vvi18g1394 292 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 63 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1394 Vvi-Chr18 14210516 14227529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1394 - - vvi:100242739 517.309