Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04322 ATGACCGACGGTTTCTGGAATCGTCAGCAACCGCTTCTCCCTTCTCCCGGTTTGCTCAAAAGACCTCGCACTGAATATGATATATCACCTTCTGGTCTGACCACGGGTAATGGGATGCATAATTATGTTGCTCAAAATAATGGTCACCAAATGCCAAAGGACACTAACACACTTGGGTCTGCTTATGACCACTACCTTCAGAGTGCGGGGCTTACATCGTTTAATTCCGGGGAAGCTAGTGGAATTGGTGGTGTTGGATTGGCAAGGGGTGCTGGTGGAATACCAGGCCATTCTCTAGGTGATCCTTCTGTCATGGGGCGTCCTGGTGGTGTCGGTGGTCCTGATCTTGCACGTAATGGGCGTAATGTCAACTTTGGTGGTCAGCTGCCTATAGATGCAGTTTCCAGGCCCGGACCTGAGACAATACCACTACCCCGAGATGCGTCAAGTACTTTATATGTTGAAGGTCTCCCGCCTGACTGCACAAAAAGAGAAGTGGCTCATATCTTTCGCCCTTTTGTGGGATATAGAGAAGTGAGACTTGTAACGAAAGAATCCAAGCATCGAGGTGGCGATCCTTTAATCCTTTGTTTTGTAGATTTTGCAAATCCGCCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGGTTATAGAGTTGATGAAGTCAATCCTGATTCCAATTACTTGAGACTTCAGTTTTCTCGGTCTCCTGGCCCTAGAAGTGGGCCTGCACCTCGCGGCAAGAGGTGA 750 0.4853 MTDGFWNRQQPLLPSPGLLKRPRTEYDISPSGLTTGNGMHNYVAQNNGHQMPKDTNTLGSAYDHYLQSAGLTSFNSGEASGIGGVGLARGAGGIPGHSLGDPSVMGRPGGVGGPDLARNGRNVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPPDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPPCAATAMSALQGYRVDEVNPDSNYLRLQFSRSPGPRSGPAPRGKR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04322 249 Gene3D - 146 237 IPR012677 -
Tsu01g04322 249 MobiDBLite consensus disorder prediction 98 120 - -
Tsu01g04322 249 CDD RRM_RBPMS_like 150 232 - -
Tsu01g04322 249 PANTHER RNA-BINDING PROTEIN 2 6 249 - -
Tsu01g04322 249 SUPERFAMILY RNA-binding domain, RBD 126 242 IPR035979 GO:0003676
Tsu01g04322 249 SMART rrm1_1 151 225 IPR000504 GO:0003723
Tsu01g04322 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 236 IPR000504 GO:0003723
Tsu01g04322 249 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 249 - -
Tsu01g04322 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 220 IPR000504 GO:0003723
Tsu01g04322 249 MobiDBLite consensus disorder prediction 229 249 - -
Tsu01g04322 249 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04322 Tsu-Chr1 51134971 51139658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04322 - - gmx:100815695 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04322 01 51134971 51139658 Tsu01g04322 01 51134971 51139658 ECH
Tsu06g02707 06 34930834 34936801 Tsu01g04322 01 51134971 51139658 PCT