Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0836 ATGACTGACGGTTTCTGGAATCGTCAGCAGCCGCTTGTCCCTTCTCCTGGTTTTCTCAAAAGACCTCGTACTGAATATGATGACACACCTTCTGGTCTGACCTCAGGTAATGGGATGCATAATTATATTGCTCAAAATAATGGTCACCAAATGTCAAACGACACTAAAACACTTGGGTCTGCTTATGACAGCTACCTTCGGAGTGCGGGGCAGCTTACTTCATTTAATTCTGGGGAAGCTGGTGTAATTGGCGGTGTTGGATTGGCAAGGGGTGTTAGTGGAATACCAGGCCATTCACTAGGTGATCCTTCTGTCATGGGGCGTCCTGGTGGCCCTGAAGTTGCACGTAATGGGCGTAATGTCAACTTTGGTGGTCAGCTACCAATAGATGCAGTTTCCAGGCCCAGACCTGAGTCAATACCACTTCCCCCAGATGCGTCAAGTACTTTATATGTTGAAGGGCTCCCGTCTGACTGCACAAAAAGAGAAGTGGCTCATTTAGATATCTTTCGCCCTTTTGTGGGATATAGAGAAGTGAGACTTGTGACCAAAGAATCCAAGCATCGAAGTGGAGATCCTTTAATCCTTTGTTTTGTAGATTTTGCAAATCCGCCTTGTGCTGCAACTGCCATGAGTGCCTTGCAAGGTTATAGAGTTGATGAACTCAATCCTGATTCCAATTACTTGAGACTTCAGTTTTCTCGGTCTCCTGGCCCTAGAAGTGGGCCTGCACCTCGCGGCAAGAGGTGA 750 0.4707 MTDGFWNRQQPLVPSPGFLKRPRTEYDDTPSGLTSGNGMHNYIAQNNGHQMSNDTKTLGSAYDSYLRSAGQLTSFNSGEAGVIGGVGLARGVSGIPGHSLGDPSVMGRPGGPEVARNGRNVNFGGQLPIDAVSRPRPESIPLPPDASSTLYVEGLPSDCTKREVAHLDIFRPFVGYREVRLVTKESKHRSGDPLILCFVDFANPPCAATAMSALQGYRVDELNPDSNYLRLQFSRSPGPRSGPAPRGKR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0836 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 220 IPR000504 GO:0003723
Tpr1g0836 249 SUPERFAMILY RNA-binding domain, RBD 124 242 IPR035979 GO:0003676
Tpr1g0836 249 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g0836 249 Gene3D - 144 237 IPR012677 -
Tpr1g0836 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 236 IPR000504 GO:0003723
Tpr1g0836 249 PANTHER RNA-BINDING PROTEIN 2 6 249 - -
Tpr1g0836 249 Coils Coil 248 249 - -
Tpr1g0836 249 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 249 - -
Tpr1g0836 249 CDD RRM_RBPMS_like 148 232 - -
Tpr1g0836 249 SMART rrm1_1 149 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0836 Tpr-Chr1 7028684 7033819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0836 - - gmx:100813445 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0836 1 7028684 7033819 Tpr1g0836 1 7028684 7033819 ECH
Tpr2g0772 2 9309323 9315046 Tpr1g0836 1 7028684 7033819 PCT