Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0855 ATGCATAATCATTTTGCTCGTGATGATGACCATACTGGTCACCAAATGTTAAGGGACTCACAAACAAACGGGTCTGCTTATGATCGCTACCTTCAGAGTGGGCAACGTTCTTCCTTTACTTCTGGGGAAGCTAGTACAATTAGTGCTCCTGGATTGGGAAGGGGTGTTGGTGGATTTCCAGGCCATTCACTTGCTGATCCTTCAGTCATGGGGCATCATGGAGGTGGTGGTCCCGATCTTACACCAAATGGAAGGGGTGTTAGTTATAGTGGTCAGCTACCAGTTGATGCAGTTTTTAGGCCTGGACCTGAGACAGTACCTCTACCTCCAGATGCTTCAAATACTTTATACGTTGAAGGGCTCCCTTCCGACTGCACAAAAAGAGATGCGGCACGTATCCTTTTTGTTGTGATGCAGTGCTTAGTGATTCGTGGCGGAGATCCTCTGATACTTTGTTTTGTGGACTTCGAAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAAGTTATAAAGTCGATGAATTCCATTCCGAGTCCAGTCATTTGCGGCTGCAGTTTTCTAGGTATCCTGGTCCAAGATCTGGACCTGGACCTGGATTTCGT 609 0.4696 MHNHFARDDDHTGHQMLRDSQTNGSAYDRYLQSGQRSSFTSGEASTISAPGLGRGVGGFPGHSLADPSVMGHHGGGGPDLTPNGRGVSYSGQLPVDAVFRPGPETVPLPPDASNTLYVEGLPSDCTKRDAARILFVVMQCLVIRGGDPLILCFVDFENPACAATAMSALQSYKVDEFHSESSHLRLQFSRYPGPRSGPGPGFR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0855 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Lal9g0855 203 Gene3D - 110 191 IPR012677 -
Lal9g0855 203 PANTHER RNA-BINDING PROTEIN 2 1 200 - -
Lal9g0855 203 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 200 - -
Lal9g0855 203 MobiDBLite consensus disorder prediction 1 16 - -
Lal9g0855 203 MobiDBLite consensus disorder prediction 35 94 - -
Lal9g0855 203 MobiDBLite consensus disorder prediction 1 23 - -
Lal9g0855 203 SUPERFAMILY RNA-binding domain, RBD 107 201 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0855 Lal-Chr9 6298979 6304638 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0855 - - pvu:PHAVU_007G078500g 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0855 9 6298979 6304638 Lal9g0855 9 6298979 6304638 ECH
Lal2g0973 2 6550063 6556940 Lal9g0855 9 6298979 6304638 LSH
Lal1g0860 1 6041237 6047488 Lal9g0855 9 6298979 6304638 LSH