Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1689 ATGTCAGATCATCAGAGACAAAGAATCCACCCTATGAATGTGGAAACACAACCACACCATAGGACACCATTAGTACCTCCTGGTTCGTCTAGATCAGAAAAGGTTATCCATGTGCCTCCTCCGATTCTTCATCAACATGCTATGCCAGCGATAAACTCTTCAAAACCGAAAAGAAACTGTTTCTGCAAGTGCATATGTTGGACACTAACCTTGTTATTCCTTCTACTCATTATCTTGGCTGCAACTGTAGGAAGCCTTTACCTTGTCTTCAAACCAAAGCTTCCAAATTACTCAGTTGACACTTTGAGGATAAGTGATCTGAGACTTAACTTTGATTTGAGTCTGTATGCAAAGTTCGATGTGAAAATCACAGCAACCAACCCGAACAAGAAGATTGGTATTTACTATGAAAAAGGAGGGAAGTTGAGTGTATTCTACACAAACACAAGGCTTTGTGAAGGATCTTTACCTGAATTCTACCAAGGTCATCAGAACAAAACAGTGCTTAATGTATCCTTAACAGGTCAAGTTCAGTCCGGGAGCACATTAATGGCAGCGTTACAACAACAGCAGCAGACAGGAAGAATTCCATTGGATCTCAATATCCATGCACCAGTTGCTATCAAACTTGGGAGGTTGAAGTTGAAGAAGGTGAAAGTGTTGGGTCAATGCCAGTTGGTGGTTGATAGTTTATCATCTAATAATCTTGTAAGCATTAAGGCTAGTAACTGTAACTTCAGAATGAAACTTTAA 753 0.3997 MSDHQRQRIHPMNVETQPHHRTPLVPPGSSRSEKVIHVPPPILHQHAMPAINSSKPKRNCFCKCICWTLTLLFLLLIILAATVGSLYLVFKPKLPNYSVDTLRISDLRLNFDLSLYAKFDVKITATNPNKKIGIYYEKGGKLSVFYTNTRLCEGSLPEFYQGHQNKTVLNVSLTGQVQSGSTLMAALQQQQQTGRIPLDLNIHAPVAIKLGRLKLKKVKVLGQCQLVVDSLSSNNLVSIKASNCNFRMKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1689 250 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g1689 250 Pfam Late embryogenesis abundant protein 122 219 IPR004864 -
Tpr1g1689 250 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g1689 250 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 29 248 - -
Tpr1g1689 250 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 29 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1689 Tpr-Chr1 16146561 16147834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1689 26 250 EF-hand Containing Proteins AT5G21130 28.261 3.67e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1689 - - gmx:100813932 353.984