Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0837 ATGGCGGATACCTCTTTTTTCTTCACAAACTTTCCTGAACATTTTATGGAGAGAGATCTTTGGAAGGTCTTTCAAAGGTGGGGAAGGGTTCTGGACGTGTTTGTTTCAAGAAAACTCAATGCAAGGAATCAGAAGTTTGGTTTTGTAAGGTTTCAGGGAGTGAATGATGTTCATTCTCTGGAAAGAGAGTTGGATGCAATTTGGATTGGCACCTGGAAGCTGCAGGTGAACCTTCCCAAGTATCAGAGGAAGGATGGACCAAGGAAGCAGAGGAATGAAGGGTTTAGACTCGGGTGGAATCCAAAGCCGAGCACAACGCATCCTAGGGAAGTGGGGAGCATGAAGGGAAAGCAGACGAAACATTTTTCATTCGCTCAAGTCGTTTCTGAGGGCGTAGCCAAGAACGAAACTAGTGAGAAGGTAAGCAGTTCTGTAGGGGACGAGTTAGTTTATCAGATTACAGTGGAGGTAGATCAGGAGTCGTGGCTAGAAGGAAGCTTTGTTGGATGTTTCAAGGAGATTCCTCGCCTGCAAACGATTAAGGAGAGCTTTGTGATGGGAGGTTTTAGCTTAGTCAAACTGAGATATCTTGGAGGAAGATTTGTTCTGCTTTCATGTGATGAAGGAGGGAGTTTGCGAAAGATCTTAGCAGATAATAGATCTTGGTTCGATGAAGTCTTCCCGACGGTTACGCCTTGGGATGGTTCGTTCGTTCCGAAAGAACGTTGTGCATGGATACGCTGCAGAGGGATCCCGTTACAGTTCTGGTGCAACCAGAGCTTTTCCAAAGTAGGGGCTGTGGTGGGGGAGGTGTTGGAGATTGACGAAGCAACGGAGAAAAGAGAAACAATGGAGTTTGCTCGCTTTAGAGTTAAAACAATGGTAAGCACCGCAGTCAACGTGGAGAAGGAGTTGTGCATCAATGGTTGTTCGTGCAAGGTCACCTTCGTGGAGGAGGTGAGTTTCCCGGAGATGTATCTTGGCAAATGGGATGGCGGTACTTATGAGGTTGATACTGAAGCAAGCTCCGATGAAGGAAGTCTAGGGGCTAGCTTATGCGATTCTGTGGGGTCGGAGGACGGGGCTGCCGGAGAAGGAGGAGCGGGCGCCGCTGGGGAAGGAAGGATGGGGTTTGAAGACACCGTCCAGGGCAAGTTGGTTTTGGAGTGCCTTGGGAAGGAGCGCCAGCTGCACGAGGGAGTGGCTCAAGTTTAA 1215 0.4864 MADTSFFFTNFPEHFMERDLWKVFQRWGRVLDVFVSRKLNARNQKFGFVRFQGVNDVHSLERELDAIWIGTWKLQVNLPKYQRKDGPRKQRNEGFRLGWNPKPSTTHPREVGSMKGKQTKHFSFAQVVSEGVAKNETSEKVSSSVGDELVYQITVEVDQESWLEGSFVGCFKEIPRLQTIKESFVMGGFSLVKLRYLGGRFVLLSCDEGGSLRKILADNRSWFDEVFPTVTPWDGSFVPKERCAWIRCRGIPLQFWCNQSFSKVGAVVGEVLEIDEATEKRETMEFARFRVKTMVSTAVNVEKELCINGCSCKVTFVEEVSFPEMYLGKWDGGTYEVDTEASSDEGSLGASLCDSVGSEDGAAGEGGAGAAGEGRMGFEDTVQGKLVLECLGKERQLHEGVAQV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0837 404 Pfam Domain of unknown function (DUF4283) 175 291 IPR025558 -
Pvu1g0837 404 SUPERFAMILY RNA-binding domain, RBD 5 314 IPR035979 GO:0003676
Pvu1g0837 404 CDD RRM_SF 7 77 - -
Pvu1g0837 404 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 322 - -
Pvu1g0837 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 60 IPR000504 GO:0003723
Pvu1g0837 404 MobiDBLite consensus disorder prediction 83 113 - -
Pvu1g0837 404 SMART rrm1_1 5 77 IPR000504 GO:0003723
Pvu1g0837 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Pvu1g0837 404 PANTHER RNA RECOGNITION MOTIF 5 322 - -
Pvu1g0837 404 Gene3D - 1 90 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0837 Pvu-Chr1 13293329 13294543 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0837 - - pvu:PHAVU_003G099400g 630.943