Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0838 ATGGGCGATGTAGCAGATAAATTGGCGTATTTCCAAGCGATAACAGGTTTAGAAGATGCAGACCTCTGCACTGAAATCCTTGCTGCTCACAATTGGGACCTGGAACTTGCAATCTCTTCCTTCACCACTTCAGTAAACCACACCGATACTCCTCCGCAACCTCACCCTAACAATCATCTTCCCTCCGCACCCGATCACCAACCCTTACCCCAACCGCCTCCGGGTCTCGCCTGGAAACTCATCACGCTACCCGTTTCCGTTATTTCCGGCAGTCTAGGGTTAATCTCCGGCGCGATCGGTTTGGGCCTCTGGGCCGCCGGGGGAGTCCTTTCCTACTCCCTCGGCCTGGTGGGCCTGGCCTCGGCCCCCTCCTCCTCCTCCTCGGCCCCCTTGGTTTCCGTCCCGGCCGCTACTTCCGAGGCCATGGATTTCGTTGCTGCCTTCGAGAGGGACTACGGCTCTTCCGGGCCCAATTTTGTCGGCGAGGGCTTCATGGACGCGCTCCAGCGCTCGCGCAATTCCTTCAAGCTTCTCTTCGTTTACTTGCATTCCCCCGATCACCCCGATACGCCGTCGTTTTGCCACAGGACTCTCTGTTCCGAGACCATTGCCGCCTTTGTGAACGAGAATTTTGTTTGCTGGGGTGGCAGCATTCGCGCCAGTGAAGGGTTTAAGATGAGTAACAGCTTGAAAGCCTCTCGCTTTCCCTTTTGTGCTCTCGTCATGGCCGCCACTAATCAGAGGATCGCTCTCCTTCAACAGGTTGAAGGTCCAAAATCCAGCGAGGAGCTGCTAGTGACACTGCAGAGAGTGCTTGAAGAAAGTTCCCCTGTTCTCGTTTCAGCTAGGCTTGATGCAGAAGAAAGACGAAATAATATGCGCTTAAGGGAAGAGCAAGATGCCGCATACAGGGCTGCGCTTGAAGCTGATCAAGCTAGGGAGCGACAGAGGAGAGAAGAAGAAGAACGTCTTGCAAGGGAAGCTGCTGAAGCTGAGAGGAAGCGCAAAGAGGAGGATGAGGCTCGTGAAAGAGCAGCACAAGAAGCTGCAGAGAAACAAGCTGCATTAGCTAAAATGCGTCAAGAGAAAGCTCAGTCTCTGGGTGAAGAACCTGAAAAAGGACCTGATGTTACACAGGTTTTGGTACGGTTTCCAAATGGTGAACGTAAGGGAAGGAGGTTCAACAGCACAGCAACAATTCAGTCTTTATATGACTATGTTGACTCACTGGGAAGTTTAGAAGCCGAGAGTTACAGCCTGGTATCCAATTTTCCACGGGTTATGTATGGACAAGAAAAACTAGCACTGTCTTTGAAGGAAGCAGGATTGCATCCTCAGGCCAGCCTATTTGTGGAGATCAGTTCATGA 1368 0.5227 MGDVADKLAYFQAITGLEDADLCTEILAAHNWDLELAISSFTTSVNHTDTPPQPHPNNHLPSAPDHQPLPQPPPGLAWKLITLPVSVISGSLGLISGAIGLGLWAAGGVLSYSLGLVGLASAPSSSSSAPLVSVPAATSEAMDFVAAFERDYGSSGPNFVGEGFMDALQRSRNSFKLLFVYLHSPDHPDTPSFCHRTLCSETIAAFVNENFVCWGGSIRASEGFKMSNSLKASRFPFCALVMAATNQRIALLQQVEGPKSSEELLVTLQRVLEESSPVLVSARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEEERLAREAAEAERKRKEEDEARERAAQEAAEKQAALAKMRQEKAQSLGEEPEKGPDVTQVLVRFPNGERKGRRFNSTATIQSLYDYVDSLGSLEAESYSLVSNFPRVMYGQEKLALSLKEAGLHPQASLFVEISS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0838 455 Gene3D Glutaredoxin 127 279 - -
Pvu1g0838 455 Coils Coil 304 362 - -
Pvu1g0838 455 MobiDBLite consensus disorder prediction 54 71 - -
Pvu1g0838 455 CDD UBX 380 452 - -
Pvu1g0838 455 Gene3D - 371 453 - -
Pvu1g0838 455 Gene3D - 2 48 - -
Pvu1g0838 455 SMART ubx_3 371 453 IPR001012 GO:0005515
Pvu1g0838 455 SMART 45neu3 143 269 IPR006577 -
Pvu1g0838 455 CDD UBA_FAF 11 42 - -
Pvu1g0838 455 SUPERFAMILY Ubiquitin-like 336 452 IPR029071 -
Pvu1g0838 455 Pfam UBA-like domain 6 42 - -
Pvu1g0838 455 MobiDBLite consensus disorder prediction 309 377 - -
Pvu1g0838 455 MobiDBLite consensus disorder prediction 45 71 - -
Pvu1g0838 455 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 455 - -
Pvu1g0838 455 CDD UAS 159 274 - -
Pvu1g0838 455 ProSiteProfiles UBX domain profile. 373 451 IPR001012 GO:0005515
Pvu1g0838 455 MobiDBLite consensus disorder prediction 309 370 - -
Pvu1g0838 455 Pfam UBX domain 373 452 IPR001012 GO:0005515
Pvu1g0838 455 PANTHER FAS-ASSOCIATED PROTEIN 1 455 - -
Pvu1g0838 455 SUPERFAMILY Thioredoxin-like 137 283 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0838 Pvu-Chr1 13370510 13374384 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0838 K18726 - gmx:100812325 626.32