Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1674 ATGGCAGATGTAGCCGATAAACTTGCCTATTTCCAAGCAATCACCGGTTTAGAAGATCCCGACCTCTGCACTGAGATCCTCGCCGCTCACGGTTGGGACCTCGAACTCGCTATTTCATCTTTCACCACTACAACCGCCGCAACAACCACCACCGACACCAACAACAACAACCACGATGATGATGTTAATCTACAATCAATTTCCGAATCAGAACCGCCACTTCCTCCACCACCTCCCGGATTAGCTTGGAAGCTAATCAAATTACCTATCTCCGTGATTTCCGGTAGTCTAGGGTTAGTTTCCGGTGCAATTGGTTTGGGCTTATGGGCTGCCGGTGGTGTTCTTTCGTATTCCTTGGGCTTTGTAGGCTTAGGCTCGGGAAGTTCGTCTTCATCGGCTTCGGGTTCTGCTTCGCCGTTGGTTTCTGTCTCGGCGGCGACTACTGAAGCTATGCAATTTGTTGCGGCTTTTGAGAGAGATTATGGAACAACTACGAAGCCGAATTTTGTGAGTGAGGGTTTCATGGATGCGCTTCAGAGGTCAAGGAATTCGTTTAAGCTTTTGTTTGTTTATTTGCATTCTCCTGATCATCCTGATACGCCGTTGTTTTGTCGAAGGACGCTTTGTTCGGATGTTTTTGTTGAGTTTGTGAATCAGAATTTTGTTTGCTGGGGTGGTAGTATTCGTGCTAGTGAAGGTTTTAAGATGAGTAATAGTTTGAAAGCTTCTAGGTTTCCGTTTTGTGCTCTTGTTATGGCTGCTACTAATCAGAGAATTGCCCTTCTTCAACAGGTTGAAGGTCCAAAATCCCCCGAGGAGATGTTAGTGGTACTTCAGAGAGTGCTTGAAGAAAGTTCCCCAGTTCTTGTTGCAGCAAGGCTTGATGCAGAAGAAAGGCGTAATAATGCACGCTTAAGGGAGGAGCAAGATGCTGCATACAGGGCTGCACTAGAAGCTGATCAAGCTAGGGAACGACAGAGAAGAGAAGAAGAAGAACGTCTTGCAAGGGAAGCTGCTGAAGCTGAGAGAAAGCTCAAGGAAGAAGAAGAGGCACGTGAAAGAGCAGCGCAGGAAGCTGCAGAGAAACAAGCAGCATTAGCTAAATTACGTGAAGAGAAAGCTCAGTCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAGGTTTTGGTACGGTTTCCAAATGGTGTACGCAAGGATAGGAGGTTCAACAGCACAGTGACAATTCAATCTTTGTATGACTATGTTGATTCATTGGGTTTGTTAGAAGCCGAGAGTTACAGCCTAGTCTCTAATTTTCCTCGGGTTGTTTATGGACAAGAAAAATTGACACAGTCATTAAAGGAAGCTGGATTGCATCCTCAGGCCAGCCTGTTTGTGGAGCTCAGCTCATGA 1398 0.4592 MADVADKLAYFQAITGLEDPDLCTEILAAHGWDLELAISSFTTTTAATTTTDTNNNNHDDDVNLQSISESEPPLPPPPPGLAWKLIKLPISVISGSLGLVSGAIGLGLWAAGGVLSYSLGFVGLGSGSSSSSASGSASPLVSVSAATTEAMQFVAAFERDYGTTTKPNFVSEGFMDALQRSRNSFKLLFVYLHSPDHPDTPLFCRRTLCSDVFVEFVNQNFVCWGGSIRASEGFKMSNSLKASRFPFCALVMAATNQRIALLQQVEGPKSPEEMLVVLQRVLEESSPVLVAARLDAEERRNNARLREEQDAAYRAALEADQARERQRREEEERLAREAAEAERKLKEEEEARERAAQEAAEKQAALAKLREEKAQSLGEEPEKGPNVTQVLVRFPNGVRKDRRFNSTVTIQSLYDYVDSLGLLEAESYSLVSNFPRVVYGQEKLTQSLKEAGLHPQASLFVELSS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1674 465 CDD UBA_FAF 11 41 - -
Tpr1g1674 465 MobiDBLite consensus disorder prediction 319 366 - -
Tpr1g1674 465 ProSiteProfiles UBX domain profile. 383 461 IPR001012 GO:0005515
Tpr1g1674 465 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 465 - -
Tpr1g1674 465 SMART ubx_3 381 463 IPR001012 GO:0005515
Tpr1g1674 465 PANTHER FAS-ASSOCIATED PROTEIN 1 465 - -
Tpr1g1674 465 SUPERFAMILY Thioredoxin-like 148 293 IPR036249 -
Tpr1g1674 465 CDD UAS 169 284 - -
Tpr1g1674 465 Pfam UBX domain 383 462 IPR001012 GO:0005515
Tpr1g1674 465 Pfam UBA-like domain 6 43 - -
Tpr1g1674 465 Gene3D - 386 464 - -
Tpr1g1674 465 Coils Coil 314 379 - -
Tpr1g1674 465 CDD UBX 390 462 - -
Tpr1g1674 465 Gene3D Glutaredoxin 136 300 - -
Tpr1g1674 465 Gene3D - 2 69 - -
Tpr1g1674 465 SMART 45neu3 152 279 IPR006577 -
Tpr1g1674 465 SUPERFAMILY Ubiquitin-like 346 462 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1674 Tpr-Chr1 15910981 15916844 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1674 K18726 - gmx:100812325 562.762