Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1680 ATGACTAATGATAAGGGAGTTGAATGGAGAATTAAGGTAGAAGATGGTCCATGGAAAAGAGCTGGAATTTCTTGTAGCATGTGGACATTTATAACAAGTTTTTATTTCAAGTTATGCAAATTTGTGAAGAAAGCTTGGGATATAGGTGTTAATGATCCAAGAAAATTTATCCACTGTGTGAAAGTAGGGTTAGCACTTGCAGTTGTCTCACTTTTCTACTACTTGAAGCCTTTATATGATGGAGTCGGAAAAAATGCTATGTGGGCTGTCATGACCGTGATCGTAGTTTTTGAGTACACCGCCGGTGCTACAATATATAAAAGTATAAACAGAATATGTGGAACTACTCTTGCTGGACTTCTAGCCTTAGGTGTACAATGGGTTGCCAGTAGAGCAGGAGCAGAATGGGAGCCTGTAATTGTTGGAGCCTCACTCTTTCTGCTAGCTTCTGCGGTGACATTCTCAAGATTCATTCCAACTATAAAGGCTCGTTTTGATTATGGTGCTCTGATATTTATTTTAACTTTCAGCTTGGTTTCAGTATCTGGTTATCGGATCGATGAATTGTTTACTTTGGCAAACCAAAGAATCTCCACTATTATAATTGGAACTTCATTGTGTATAATTGTTAGCACAACTATTCGTCCTGTTTGGGCTGGTCAAGAACTTTATGTTTTAGTAACCGGAAATCTCGACAAGCTCGCTGATTCTTTAGAAGGTTGTGTGGCTCAATACTTTGAAGCCCAAACATCTAGTGAGGACTCTAACAAAAATCTCATGGGTTATAAGTGTGTGTTAAACTCCAAAGCAACCGAAGAATCACAGGCTAATTTAGCTAGATGGGAACCTACCCATGGACGCTTCAATTTTTGTCACCCATGGAAGCAATATCTAAAAATTGGTGCCACAATGCGTAGATGTGCTTTTTGCATTGATGCTCTTTTTGGATGCATAAATTCAGAAAACAAGACCTCAAATGACATCAAGAAGATTATGAGCATAACCTCAATGAAAGTGGGAATCAACTCTACAAATGTCTTAAAAGAGTTGGCAATTACAATAAAGAATATGAGAAAATCAAATAAACTTGATCTTCTAGTCATGGAGATGAATAATGCTGCACAAGAGCTTCAAAATTTATTAAAATCTTATCCAAACACACAAAATAATCCAAAAGAAGCATCCCTTGGTGAAGCAAAAATTGAAATCCCAATTATGGAAATTATTCAAGTGGGCACAATAGTTTCTTTGCTTAGTGAAATTGTAACACGTGTGGAAGACATTGTGAAAGAAGTTGAAGAATTATCAAATTTAGCTAAATTCAAAGAACCAAAGACTAAGTGTGACAAATCCAAACAACATTCAATGGATAGCAAGATCTCTCCAGAACAACAGAATGATGAGGAAGTTATTATCAAAACACTTCAAATGGTTTGA 1437 0.3653 MTNDKGVEWRIKVEDGPWKRAGISCSMWTFITSFYFKLCKFVKKAWDIGVNDPRKFIHCVKVGLALAVVSLFYYLKPLYDGVGKNAMWAVMTVIVVFEYTAGATIYKSINRICGTTLAGLLALGVQWVASRAGAEWEPVIVGASLFLLASAVTFSRFIPTIKARFDYGALIFILTFSLVSVSGYRIDELFTLANQRISTIIIGTSLCIIVSTTIRPVWAGQELYVLVTGNLDKLADSLEGCVAQYFEAQTSSEDSNKNLMGYKCVLNSKATEESQANLARWEPTHGRFNFCHPWKQYLKIGATMRRCAFCIDALFGCINSENKTSNDIKKIMSITSMKVGINSTNVLKELAITIKNMRKSNKLDLLVMEMNNAAQELQNLLKSYPNTQNNPKEASLGEAKIEIPIMEIIQVGTIVSLLSEIVTRVEDIVKEVEELSNLAKFKEPKTKCDKSKQHSMDSKISPEQQNDEEVIIKTLQMV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1680 478 Coils Coil 363 390 - -
Tpr1g1680 478 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 4 465 - -
Tpr1g1680 478 MobiDBLite consensus disorder prediction 443 466 - -
Tpr1g1680 478 Pfam Aluminium activated malate transporter 46 436 IPR020966 GO:0015743
Tpr1g1680 478 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1680 Tpr-Chr1 15986709 15989619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1680 2 458 Miscellaneous Gene Families AT4G00910 50.207 3.07e-168 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1680 - - gmx:100783168 628.632