Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02767 . . . . . . . . . . . . . . . . . . . . . Tpr1g1696 . . . . . . . .
Pvu1g0825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0826 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1695 . . . . . . . .
Pvu1g0827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02769 . . . . . . . . . . . . . . . . . . . . . Tpr1g1694 . . . . . . . .
Pvu1g0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g00817 . . . . . . . . . . . . . . . . . . . . . Tpr1g1691 . . . . . . Vivi3g02297 .
Pvu1g0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02771 . . . . . . . . . . . . . . . . . . . . . Tpr1g1690 . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0821 Chr1 12353173 12353544 +
Pvu Pvu1g0822 Chr1 12799865 12801781 -
Pvu Pvu1g0823 Chr1 12852204 12852638 +
Pvu Pvu1g0824 Chr1 13059785 13062932 -
Lasa Lasa6g02767 Chr6 517930201 517933900 -
Tpr Tpr1g1696 Chr1 16211009 16214795 +
Pvu Pvu1g0825 Chr1 13071937 13072758 -
Pvu Pvu1g0826 Chr1 13081970 13085909 +
Tpr Tpr1g1695 Chr1 16194331 16198904 -
Pvu Pvu1g0827 Chr1 13087297 13095805 +
Lasa Lasa6g02769 Chr6 518191683 518198540 +
Tpr Tpr1g1694 Chr1 16184681 16191578 -
Pvu Pvu1g0828 Chr1 13101267 13102484 -
Lasa Lasa6g00817 Chr6 30565751 30567063 +
Tpr Tpr1g1691 Chr1 16158136 16159788 +
Vivi Vivi3g02297 Chr3 38198674 38199216 +
Pvu Pvu1g0829 Chr1 13102862 13103058 -
Pvu Pvu1g0830 Chr1 13172599 13175355 +
Lasa Lasa6g02771 Chr6 518352907 518354965 +
Tpr Tpr1g1690 Chr1 16148216 16151338 -