Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0882 ATGAGTGGCAAGGTTTATCATGTTGAGCAACAAGCTTTTCTCCAATTCCTCAATTGGGTCTTTAGCATGAGTGAGTTTTTGTTGCAACTTACACAAAAGTGCAAGAAGCTTCCAAAACAAATGAAGCAAATCCATTCCCTTATAATCACCAATGGCCACCTCATTCATCACCCAAATGCTCCATCATCATTATCCCACCCATGGATGCCTACACTTCTCTACAATGCCCTCATCAGTGCCTATCACATTCACAACCACAATGCCATTCTCCTTTTCCCTCAGATGCTTGCAAACCAAGCCCCACCCAACAGTCACACCTTCCCTCCTCTTCTCAAAATTTCCCCTCTTCCTTTGGGCACTGCCCTTCACTCACAAACCCTCAAGCGTGGCCTTTTTTTAGATGGACAAACAGCTCTTGACTGTGGAAAGCAAGTTCATGGATATGTAGTGATGAATGATGTCAAGTTGGGAGTTTTTGTGGGAACTTCGTTGATACATCTTTATGGGAAAATTGGGTGCTTTAGTTATGCGGAGAATGTTTTCAGAGTAATGGCTGTCAGAGAGGTGTGTACTTGGAATGCAATGATTTCTCTATTGGCTTCCCATGGTAGAGAGAAGGAGGCTCTCGACATGTTTGAGAAGATGAAGCTTCATGGGTTGAAACCAAATAACATTACCTTTGCTGCAGTTCTTACAGCATGTGCTCGTGGAAATTTTGTTAGGGAAGGTTTGGAGTTGTTTCGATCAATGTGGCGTAACTTTGGAATAGAGCCAGTAATGAAGCACTATGGATGCGTGATTGATCTTTTGGGTAGAGCAGGGCATACTGAAGAAGCAGCCGAGGTCATGAGAAATATGCCTTTTCAGCCTGATGCATCTGTTTTGGGAGCCTTTTTGGGTACATGTAGGATTCATGGAGCTATTGAATTTGGAGAAGAAATAGGAAAAAAGATGCTTAGATTGCAGACACAACACTGTGGCCAATATGTGTTATTGTCAAGCATGAATGCTGAGAAGGAAAGATGGGATCATGCTGCTGATCTGAGGAGAGAAATAATGGAGGCTGGAATTCAGAAAATTCCAGCATACAGTATGCTGGTTGCTACAAGATATTATCCAAACCTTCTCTCACAAGCCGACCCTAATGATTTGACATACATTTCTATTCTTAACCAACATGGAACATGTTCTCTGAATATTGGTTGCAAAGATCTCAGAGTGTATATATGA 1230 0.4211 MSGKVYHVEQQAFLQFLNWVFSMSEFLLQLTQKCKKLPKQMKQIHSLIITNGHLIHHPNAPSSLSHPWMPTLLYNALISAYHIHNHNAILLFPQMLANQAPPNSHTFPPLLKISPLPLGTALHSQTLKRGLFLDGQTALDCGKQVHGYVVMNDVKLGVFVGTSLIHLYGKIGCFSYAENVFRVMAVREVCTWNAMISLLASHGREKEALDMFEKMKLHGLKPNNITFAAVLTACARGNFVREGLELFRSMWRNFGIEPVMKHYGCVIDLLGRAGHTEEAAEVMRNMPFQPDASVLGAFLGTCRIHGAIEFGEEIGKKMLRLQTQHCGQYVLLSSMNAEKERWDHAADLRREIMEAGIQKIPAYSMLVATRYYPNLLSQADPNDLTYISILNQHGTCSLNIGCKDLRVYI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0882 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 136 369 - -
Aed5g0882 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 132 - -
Aed5g0882 409 Pfam E motif 306 364 IPR046848 -
Aed5g0882 409 Gene3D Tetratricopeptide repeat domain 240 374 IPR011990 GO:0005515
Aed5g0882 409 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 258 IPR002885 -
Aed5g0882 409 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Aed5g0882 409 Pfam PPR repeat 162 185 IPR002885 -
Aed5g0882 409 Pfam PPR repeat 263 286 IPR002885 -
Aed5g0882 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 136 369 - -
Aed5g0882 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 132 - -
Aed5g0882 409 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Aed5g0882 409 TIGRFAM PPR: pentatricopeptide repeat domain 225 258 IPR002885 -
Aed5g0882 409 Pfam PPR repeat family 189 236 IPR002885 -
Aed5g0882 409 Gene3D Tetratricopeptide repeat domain 140 239 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0882 Aed-Chr5 6695918 6700027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0882 142 359 Glycoside Hydrolase AT3G49170 37.156 9.28e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0882 - - gmx:100798543 422.55