Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1288 ATGAGTTGCTCAGGTGGTTTTTTGTTGCAACTAACACAAAGGTGCAAGAAGCATCCGAAACAAATGATGCAAATTCATTCTCTTATAGTCACTAATGGCCACCTCCTTCATTATCCAAATGCTCCACTAAGTGATCAATGGATGCCTACTCTTCTCTACAATGCTCTCATCAGTGCCTATCATACACACAAACACAAGGTTCTTCTTTTCACTTATATGCTTGCAAACCAAGCTCCACCCAACAGTCACACTTTCTCTCCCCTTCTCAAATCTTCCCCTCTTCCTTTGGGCACTACCTTTCACTCACAAACCCTCAAGCGTGGCCTTTTGTCTGATCCCTTCATTCTCACCTCTCTCCTTGCCCTCTATGCAAGAAACCAGCTCCTTCCTCATGCACACAGGGTGTTTGAAGAATTTCCTATGGTTTGCATTGTTGCGTGCAATGCCATGCTCAATGCTTTTTCCATAAATGGGCACATGGAGGCTGCTGTGGCATTCTTTGAACGCATGCCCCAAAAGGATGTTTACTCATGGACAACTGTTGTGAATGGTTTTGCTTTGAATGGGAATTTTGGTGCCTCAATTCGGTTTTTCGGGAAGATGATGAGTCACGGGGACGTGGTGCGTGGTTTGGTGAAGCCTAATGAGGCTACTTGTGCTAGTGTGCTCTCTTCTTGTGCCAATTTAGACGGTAGAGTGGCTCTTGATTGTGGAAAGCAAGTTCATGGATATGTACTGATGAATGAGGCCAAGTTAGGAGTAAATGTGGGAACTTCGTTGATAAATCTTTATGGGAAGATGGGGCGCTTGAGTAATGCTGAGAAGGTTTTCAGACAAATGGTAGTCAGAAAGGTATGTACTTGGAATGCAATGATTTCTTCGTTGGCTTGCCATGGTAGAGAGAAGGAGGCTCTGGACATGTTTGAGAAGATGAAGCTTCATGGGTTGAAACCAAGCAGCATTACTCTTGTTGCAGTTCTTACAGCATGTGCTCGTGGAAATTTTGTCAGGGAAGGATTGGAGTTATTTCGATCAATGTGGCAGGACTTTGGAATAGAGCCAATAATGAAGCACTATGGATGTGTGGTTGATCTTTTGGGTAGAGCAGGACATGTTGAAGAAGCAGCTGAGATCATAAGAAATATGCCTTTTAAGCCTGATGCATCTGTTTTGGGAGCCTTCTTGGGTGCGTGCAGGATTCATGGAGCTATAGAACTAGGAGAAGAAATAGGAAAAAAAATGCTTAAATTGCAGAGACAACACTGTGGCCAATATGTGCTATTGTCAAGCATGAATGCGGAAAAGGAAAGATGGGATCATGCTGCTGATCTGAGGAGGGAAATAATGGAGGCTGGAATTCACGAAATTCCTGCATACAGTATGGTTGACTTGACATAA 1398 0.4363 MSCSGGFLLQLTQRCKKHPKQMMQIHSLIVTNGHLLHYPNAPLSDQWMPTLLYNALISAYHTHKHKVLLFTYMLANQAPPNSHTFSPLLKSSPLPLGTTFHSQTLKRGLLSDPFILTSLLALYARNQLLPHAHRVFEEFPMVCIVACNAMLNAFSINGHMEAAVAFFERMPQKDVYSWTTVVNGFALNGNFGASIRFFGKMMSHGDVVRGLVKPNEATCASVLSSCANLDGRVALDCGKQVHGYVLMNEAKLGVNVGTSLINLYGKMGRLSNAEKVFRQMVVRKVCTWNAMISSLACHGREKEALDMFEKMKLHGLKPSSITLVAVLTACARGNFVREGLELFRSMWQDFGIEPIMKHYGCVVDLLGRAGHVEEAAEIIRNMPFKPDASVLGAFLGACRIHGAIELGEEIGKKMLKLQRQHCGQYVLLSSMNAEKERWDHAADLRREIMEAGIHEIPAYSMVDLT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1288 465 TIGRFAM PPR: pentatricopeptide repeat domain 258 285 IPR002885 -
Pvu11g1288 465 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Pvu11g1288 465 TIGRFAM PPR: pentatricopeptide repeat domain 176 205 IPR002885 -
Pvu11g1288 465 TIGRFAM PPR: pentatricopeptide repeat domain 145 175 IPR002885 -
Pvu11g1288 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Pvu11g1288 465 Pfam PPR repeat family 284 332 IPR002885 -
Pvu11g1288 465 Gene3D Tetratricopeptide repeat domain 241 334 IPR011990 GO:0005515
Pvu11g1288 465 Gene3D Tetratricopeptide repeat domain 98 240 IPR011990 GO:0005515
Pvu11g1288 465 PANTHER - 15 464 - -
Pvu11g1288 465 Pfam PPR repeat 359 382 IPR002885 -
Pvu11g1288 465 Pfam PPR repeat 258 283 IPR002885 -
Pvu11g1288 465 Pfam PPR repeat 176 205 IPR002885 -
Pvu11g1288 465 Pfam PPR repeat 145 174 IPR002885 -
Pvu11g1288 465 Gene3D Tetratricopeptide repeat domain 335 462 IPR011990 GO:0005515
Pvu11g1288 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Pvu11g1288 465 PANTHER - 15 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1288 Pvu-Chr11 26677953 26679744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1288 53 453 Glycoside Hydrolase AT3G49170 30.676 1.50e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1288 - - var:108339332 763.066