Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1233 ATGAGTCATTCAGGTGAGTGTTTGCTGCAACTAGCACAATGCTACCTTAAACACCCAAGACAACTGAAGCAAATCCATTCCCTTATAGTCACCAATGGCCACCTCCTTCTTCCTCACCCCGAACCAGCATCATCTTCTTCCCATGATAAATGGAAACCAACCCTTCTCTTCAACGCCCTCATCAGAGCCTATCACATTCACAACCACCACACCAAAGTCCTTCTCCTCTTCACCCACATGCTAGCAAACCAAGCCCCACCCAACACTCACACCTTCCCACCCCTCTTCAAATCCTCACCTCCTTTTCTTCTCACACCCCTCCACTCTCAAGCCCTCAAGCGTGGCACACTCTCTGACCCTTTTGTCCTCACCACTCTCCTTGTCCTCTATGCTAGAAATAACCACCTTGTTCATGCACACAAGGTGTTTGAGGAAATTCCTACCTTTTGCGTCGTTGCTTGCAACGCAATGCTCAATGCTTTGTCCGTGAATGGGAAAATGGAAGCTGCTGTGTCACTCTTGCATAGCATGCCAATCAGGGATGTTGTTTCATGGACAACTGTTGTCAATGGGTTTGCATTGAATGGGAGTTTCGGTGCTGCGATTCGGTTTTTAGGGATGATGATGGCTCATGAGGACGTTGTGGGTGGTTTGGTGAGACCAAATGAGGCTACTTTTGTTAGTGTGCTCTCCTCATGTGCCAATTTGGATGGTAAAGCGGGTATTGATTGTGGGAAGCAAGTTCATGGATACATGGTGGTGAGAGGGGTCAGCATGGGAGTCTTTGTAGGAACTTCATTGATAGATCTTTATGGGAAGATGGGGTGTTTGAATTCTGCTGTGAATGTTTTCAGAGTGATGGTTGCCAGAGAGGTCTGCACTTGGAATGCAATGATTTCTTCACTGGCTTCAAATGGTAGGGAGAAGGAGGCTCTGGAATTGTTTGAGAAGATGAAGCTTCGAGGTTTGCAGCTTAATGGCATTACCTTCGTGGCGGTTCTTACAGCATGTGCTCGTGGGAAACTTGTCAAGGAAGGATTGGAGTTGTTTCAATCAATGTTGCATGAGTTTCAAGTGGTGCCAGTAATGGAGTACTATGGGTGTGTGATTGATCTTTTGGGTAGAGCAGGACACATCCAGGAAGCGGCTGAAATAATCCGAAACATGCCTTTTCAGCCCGATGCATCTGTATTGGGGGCATTCCTGGGTGCATGTAGGATCCATGGAGCTATTGAACTTGGTGAAGAAATAGGGAAAAAGATGCTTAAATTGCAGCCACAGTACTGTGGCCAATATGTGTTATTATCAAGTATGAATGTGGAGAGAGAAAGATGGGATCATGCAGCTGATATGAGGAAAGAAATAATGGAGACTGGAATTCAGAAAATTCCAGCATACAGTATGGTTCATTTGACATAA 1419 0.4581 MSHSGECLLQLAQCYLKHPRQLKQIHSLIVTNGHLLLPHPEPASSSSHDKWKPTLLFNALIRAYHIHNHHTKVLLLFTHMLANQAPPNTHTFPPLFKSSPPFLLTPLHSQALKRGTLSDPFVLTTLLVLYARNNHLVHAHKVFEEIPTFCVVACNAMLNALSVNGKMEAAVSLLHSMPIRDVVSWTTVVNGFALNGSFGAAIRFLGMMMAHEDVVGGLVRPNEATFVSVLSSCANLDGKAGIDCGKQVHGYMVVRGVSMGVFVGTSLIDLYGKMGCLNSAVNVFRVMVAREVCTWNAMISSLASNGREKEALELFEKMKLRGLQLNGITFVAVLTACARGKLVKEGLELFQSMLHEFQVVPVMEYYGCVIDLLGRAGHIQEAAEIIRNMPFQPDASVLGAFLGACRIHGAIELGEEIGKKMLKLQPQYCGQYVLLSSMNVERERWDHAADMRKEIMETGIQKIPAYSMVHLT* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1233 472 PANTHER - 39 471 - -
Lja3g1233 472 Gene3D Tetratricopeptide repeat domain 292 470 IPR011990 GO:0005515
Lja3g1233 472 Gene3D Tetratricopeptide repeat domain 105 240 IPR011990 GO:0005515
Lja3g1233 472 Pfam PPR repeat 265 290 IPR002885 -
Lja3g1233 472 Pfam PPR repeat 152 178 IPR002885 -
Lja3g1233 472 Pfam PPR repeat 366 389 IPR002885 -
Lja3g1233 472 Pfam PPR repeat 123 146 IPR002885 -
Lja3g1233 472 Pfam PPR repeat 183 209 IPR002885 -
Lja3g1233 472 Pfam E motif 408 469 IPR046848 -
Lja3g1233 472 PANTHER - 39 471 - -
Lja3g1233 472 TIGRFAM PPR: pentatricopeptide repeat domain 152 181 IPR002885 -
Lja3g1233 472 TIGRFAM PPR: pentatricopeptide repeat domain 183 210 IPR002885 -
Lja3g1233 472 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Lja3g1233 472 Pfam PPR repeat family 292 339 IPR002885 -
Lja3g1233 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1233 Lja-Chr3 12954409 12955827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1233 57 471 Glycoside Hydrolase AT3G49170 31.116 5.44e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1233 - - gmx:100798543 650.588